miRNA display CGI


Results 41 - 60 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16214 3' -55.5 NC_004065.1 + 165428 0.68 0.926694
Target:  5'- aGGGCGGGCGUCGccGCGuGguUAuCGUg -3'
miRNA:   3'- -CCCGCCUGUAGCacUGC-CguAU-GCGg -5'
16214 3' -55.5 NC_004065.1 + 165083 0.68 0.927205
Target:  5'- aGGCGGugGgucaguaggcgccgUCGUcucugaGGCGGCGUcccgcccggcgacugGCGCCg -3'
miRNA:   3'- cCCGCCugU--------------AGCA------CUGCCGUA---------------UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 163440 0.7 0.878694
Target:  5'- -cGCGucCAUCGUG-CGGCAgGCGCUc -3'
miRNA:   3'- ccCGCcuGUAGCACuGCCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 162446 0.68 0.926694
Target:  5'- cGGCGaGaucaGCGUCGUG-CGGCA-GCGCg -3'
miRNA:   3'- cCCGC-C----UGUAGCACuGCCGUaUGCGg -5'
16214 3' -55.5 NC_004065.1 + 161838 0.68 0.93171
Target:  5'- cGGGCGGACGgggacggguUCG-GAgGGaGUACGUa -3'
miRNA:   3'- -CCCGCCUGU---------AGCaCUgCCgUAUGCGg -5'
16214 3' -55.5 NC_004065.1 + 157954 0.72 0.79226
Target:  5'- aGGGUGGcguccaccggcuGgGUCGUGAUGGCGUACa-- -3'
miRNA:   3'- -CCCGCC------------UgUAGCACUGCCGUAUGcgg -5'
16214 3' -55.5 NC_004065.1 + 157011 0.77 0.486925
Target:  5'- aGGGCGucuCGcUCGUGGCGGCAUcguCGCCc -3'
miRNA:   3'- -CCCGCcu-GU-AGCACUGCCGUAu--GCGG- -5'
16214 3' -55.5 NC_004065.1 + 156288 0.7 0.849723
Target:  5'- aGGCGGGaguaGcGGCGGCAgcagugGCGCCa -3'
miRNA:   3'- cCCGCCUguagCaCUGCCGUa-----UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 154151 0.71 0.809457
Target:  5'- cGGGCGGugG-CGgcGGCGGCGgcgGCGgCu -3'
miRNA:   3'- -CCCGCCugUaGCa-CUGCCGUa--UGCgG- -5'
16214 3' -55.5 NC_004065.1 + 153623 0.69 0.905021
Target:  5'- cGGGCGG-CGccacUCGgacGGCGGCGagcucauccgcggcgGCGCCg -3'
miRNA:   3'- -CCCGCCuGU----AGCa--CUGCCGUa--------------UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 153243 0.67 0.945436
Target:  5'- -aGCGuucgcCGUCGcGGCGGCgAUGCGCCg -3'
miRNA:   3'- ccCGCcu---GUAGCaCUGCCG-UAUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 151539 0.68 0.926694
Target:  5'- cGGGCGG-UGUCG-GGCGcGCuugACGCg -3'
miRNA:   3'- -CCCGCCuGUAGCaCUGC-CGua-UGCGg -5'
16214 3' -55.5 NC_004065.1 + 151426 0.69 0.904421
Target:  5'- cGGCGcgacGACGUCGcguucGACGGCG-ACGUCg -3'
miRNA:   3'- cCCGC----CUGUAGCa----CUGCCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 149045 0.67 0.96072
Target:  5'- gGGaGCGGGCGaCGacGGCGGCGgcagGCCg -3'
miRNA:   3'- -CC-CGCCUGUaGCa-CUGCCGUaug-CGG- -5'
16214 3' -55.5 NC_004065.1 + 146756 0.7 0.849723
Target:  5'- -uGUGGGCGUCG--GCGGCGUcUGCCg -3'
miRNA:   3'- ccCGCCUGUAGCacUGCCGUAuGCGG- -5'
16214 3' -55.5 NC_004065.1 + 146597 0.67 0.964022
Target:  5'- gGGGUGGcCAUCGgggccGuCGGCGgg-GCCg -3'
miRNA:   3'- -CCCGCCuGUAGCa----CuGCCGUaugCGG- -5'
16214 3' -55.5 NC_004065.1 + 143546 0.66 0.967125
Target:  5'- aGGgGGACAUCGguaagaaGACGGgucucGCGCUa -3'
miRNA:   3'- cCCgCCUGUAGCa------CUGCCgua--UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 139851 0.72 0.765481
Target:  5'- aGGCGGGCGaCGgcggaGGCGGCGga-GCCg -3'
miRNA:   3'- cCCGCCUGUaGCa----CUGCCGUaugCGG- -5'
16214 3' -55.5 NC_004065.1 + 139527 0.66 0.972753
Target:  5'- gGGGaucaGGACGUCG-GACGcCAagACGCg -3'
miRNA:   3'- -CCCg---CCUGUAGCaCUGCcGUa-UGCGg -5'
16214 3' -55.5 NC_004065.1 + 138560 0.67 0.949576
Target:  5'- cGGCGGAC----UGACGGCGacgGUGCCg -3'
miRNA:   3'- cCCGCCUGuagcACUGCCGUa--UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.