miRNA display CGI


Results 61 - 80 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16214 3' -55.5 NC_004065.1 + 138327 0.74 0.660529
Target:  5'- -cGCGGACAUCGUGGCcGCG-AUGUCg -3'
miRNA:   3'- ccCGCCUGUAGCACUGcCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 136573 0.73 0.698575
Target:  5'- aGGGUuccGGCAUCGUGACcguggggcucaguGGCGUugGCUc -3'
miRNA:   3'- -CCCGc--CUGUAGCACUG-------------CCGUAugCGG- -5'
16214 3' -55.5 NC_004065.1 + 135558 0.71 0.817836
Target:  5'- cGGGCGGACGaCGgggaGGCGGC---CGUCa -3'
miRNA:   3'- -CCCGCCUGUaGCa---CUGCCGuauGCGG- -5'
16214 3' -55.5 NC_004065.1 + 135132 0.67 0.964022
Target:  5'- cGGGCGGGCGcggCGggugaugacGACGGgG-ACGUCg -3'
miRNA:   3'- -CCCGCCUGUa--GCa--------CUGCCgUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 133029 0.66 0.976727
Target:  5'- cGGCagcaGACGUCGcagcagcgcgacgGACGGCcgGCGCa -3'
miRNA:   3'- cCCGc---CUGUAGCa------------CUGCCGuaUGCGg -5'
16214 3' -55.5 NC_004065.1 + 132408 0.66 0.968018
Target:  5'- aGGGCGGcucuucgGCAgCGgcGGCGGCcuccuucgacguguUGCGCCg -3'
miRNA:   3'- -CCCGCC-------UGUaGCa-CUGCCGu-------------AUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 131829 0.71 0.825244
Target:  5'- cGGGCuGugGUagaacagCGUcuCGGCGUGCGCCg -3'
miRNA:   3'- -CCCGcCugUA-------GCAcuGCCGUAUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 131240 0.67 0.953501
Target:  5'- gGGGUcucGGuCGUcucCGUGGCGGCGgacguucugcGCGCCu -3'
miRNA:   3'- -CCCG---CCuGUA---GCACUGCCGUa---------UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 131028 0.67 0.957214
Target:  5'- cGGCGGAa--CGUGugGGCG-AC-CCu -3'
miRNA:   3'- cCCGCCUguaGCACugCCGUaUGcGG- -5'
16214 3' -55.5 NC_004065.1 + 130588 0.74 0.680109
Target:  5'- aGGcGCGcGAUGUCGaGGCGGCGUcUGCCg -3'
miRNA:   3'- -CC-CGC-CUGUAGCaCUGCCGUAuGCGG- -5'
16214 3' -55.5 NC_004065.1 + 130076 0.75 0.621175
Target:  5'- cGGCGGugGUCGacuACGGCG-AUGCCg -3'
miRNA:   3'- cCCGCCugUAGCac-UGCCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 128155 0.69 0.910318
Target:  5'- cGGCGu-CGUCGUcugcGGCGGCGauaGCGCCc -3'
miRNA:   3'- cCCGCcuGUAGCA----CUGCCGUa--UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 126231 0.69 0.88544
Target:  5'- aGGCGGGCGUcuucacgccCGUG-CGGCGgaucgaGCCg -3'
miRNA:   3'- cCCGCCUGUA---------GCACuGCCGUaug---CGG- -5'
16214 3' -55.5 NC_004065.1 + 125754 0.68 0.928727
Target:  5'- aGGGCccGGCGUCGUGuaucGCGGgGUggcagagagucuugaGCGCCu -3'
miRNA:   3'- -CCCGc-CUGUAGCAC----UGCCgUA---------------UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 124978 0.7 0.849723
Target:  5'- aGGGCGGcCAgaggcgcgggUCGUGcaGCGcGCucacGUACGCCa -3'
miRNA:   3'- -CCCGCCuGU----------AGCAC--UGC-CG----UAUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 124313 0.66 0.970034
Target:  5'- -cGCGGAUGUCGUGGuuCGcCGU-CGCCg -3'
miRNA:   3'- ccCGCCUGUAGCACU--GCcGUAuGCGG- -5'
16214 3' -55.5 NC_004065.1 + 123026 0.72 0.756325
Target:  5'- -aGCGuGACGUCc-GACGGCGcUGCGCCu -3'
miRNA:   3'- ccCGC-CUGUAGcaCUGCCGU-AUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 121759 0.67 0.960379
Target:  5'- -cGCGGACguccccaugacggGUCG-GACGGaaaGCGCCg -3'
miRNA:   3'- ccCGCCUG-------------UAGCaCUGCCguaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 121282 0.66 0.972753
Target:  5'- uGGGCuugaaGACccgCGUGAgGGCGacgcGCGCCc -3'
miRNA:   3'- -CCCGc----CUGua-GCACUgCCGUa---UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 121061 0.68 0.936505
Target:  5'- cGGaGCcuGGCGUCGUGccccaggucguCGGCGUACuGCCg -3'
miRNA:   3'- -CC-CGc-CUGUAGCACu----------GCCGUAUG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.