miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16214 3' -55.5 NC_004065.1 + 131829 0.71 0.825244
Target:  5'- cGGGCuGugGUagaacagCGUcuCGGCGUGCGCCg -3'
miRNA:   3'- -CCCGcCugUA-------GCAcuGCCGUAUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 225057 0.72 0.774527
Target:  5'- -aGCGcACGUCGUGAUGGCGgcCGCUc -3'
miRNA:   3'- ccCGCcUGUAGCACUGCCGUauGCGG- -5'
16214 3' -55.5 NC_004065.1 + 120222 0.72 0.783456
Target:  5'- uGGGCGGACcgcgCGUGAuCGGCGa--GUCu -3'
miRNA:   3'- -CCCGCCUGua--GCACU-GCCGUaugCGG- -5'
16214 3' -55.5 NC_004065.1 + 173439 0.72 0.79226
Target:  5'- gGGGUGacguucGACGUaccgGUGGCGGCGcucgACGCCa -3'
miRNA:   3'- -CCCGC------CUGUAg---CACUGCCGUa---UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 188256 0.71 0.800929
Target:  5'- aGGCGGACAg-GUcGGCGGuCAucUugGCCa -3'
miRNA:   3'- cCCGCCUGUagCA-CUGCC-GU--AugCGG- -5'
16214 3' -55.5 NC_004065.1 + 48867 0.71 0.809457
Target:  5'- aGGGaGGACGUCGUGcGCGGUuguUAC-CCu -3'
miRNA:   3'- -CCCgCCUGUAGCAC-UGCCGu--AUGcGG- -5'
16214 3' -55.5 NC_004065.1 + 200789 0.71 0.809457
Target:  5'- cGGCGGugG-CGggcGACGGCGUcucgGCGCg -3'
miRNA:   3'- cCCGCCugUaGCa--CUGCCGUA----UGCGg -5'
16214 3' -55.5 NC_004065.1 + 154151 0.71 0.809457
Target:  5'- cGGGCGGugG-CGgcGGCGGCGgcgGCGgCu -3'
miRNA:   3'- -CCCGCCugUaGCa-CUGCCGUa--UGCgG- -5'
16214 3' -55.5 NC_004065.1 + 135558 0.71 0.817836
Target:  5'- cGGGCGGACGaCGgggaGGCGGC---CGUCa -3'
miRNA:   3'- -CCCGCCUGUaGCa---CUGCCGuauGCGG- -5'
16214 3' -55.5 NC_004065.1 + 199555 0.72 0.774527
Target:  5'- cGGGCGcGcccCAUCGUGccGCGGUccagACGCCg -3'
miRNA:   3'- -CCCGC-Cu--GUAGCAC--UGCCGua--UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 123026 0.72 0.756325
Target:  5'- -aGCGuGACGUCc-GACGGCGcUGCGCCu -3'
miRNA:   3'- ccCGC-CUGUAGcaCUGCCGU-AUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 136573 0.73 0.698575
Target:  5'- aGGGUuccGGCAUCGUGACcguggggcucaguGGCGUugGCUc -3'
miRNA:   3'- -CCCGc--CUGUAGCACUG-------------CCGUAugCGG- -5'
16214 3' -55.5 NC_004065.1 + 60693 0.79 0.424962
Target:  5'- aGGGCGaGACG--GUGAUGGCGcUGCGCCc -3'
miRNA:   3'- -CCCGC-CUGUagCACUGCCGU-AUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 99932 0.78 0.459815
Target:  5'- aGGGCGGGCGcCGa-ACGGCAU-CGCCg -3'
miRNA:   3'- -CCCGCCUGUaGCacUGCCGUAuGCGG- -5'
16214 3' -55.5 NC_004065.1 + 193647 0.77 0.486925
Target:  5'- cGGGaCGGAgGUCucUGugGGCAaGCGCCa -3'
miRNA:   3'- -CCC-GCCUgUAGc-ACugCCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 62379 0.77 0.486925
Target:  5'- cGGCGGGgGUgGUGGCGGCGggggugGCgGCCg -3'
miRNA:   3'- cCCGCCUgUAgCACUGCCGUa-----UG-CGG- -5'
16214 3' -55.5 NC_004065.1 + 166137 0.77 0.505411
Target:  5'- cGGCaGaGACGUCGgcgccGGCGGCAgcgGCGCCg -3'
miRNA:   3'- cCCG-C-CUGUAGCa----CUGCCGUa--UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 24977 0.75 0.598572
Target:  5'- uGGGUGGGCGUCccucggccuuuuguGUGugGGCGUccguggGCGCg -3'
miRNA:   3'- -CCCGCCUGUAG--------------CACugCCGUA------UGCGg -5'
16214 3' -55.5 NC_004065.1 + 68158 0.75 0.601515
Target:  5'- -cGCGGugAUCGcGGCGGCGcGCGCg -3'
miRNA:   3'- ccCGCCugUAGCaCUGCCGUaUGCGg -5'
16214 3' -55.5 NC_004065.1 + 229671 0.75 0.631019
Target:  5'- aGGUGGGCGUCGgGGCGcGCGUcCGCUc -3'
miRNA:   3'- cCCGCCUGUAGCaCUGC-CGUAuGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.