Results 21 - 40 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16214 | 3' | -55.5 | NC_004065.1 | + | 131829 | 0.71 | 0.825244 |
Target: 5'- cGGGCuGugGUagaacagCGUcuCGGCGUGCGCCg -3' miRNA: 3'- -CCCGcCugUA-------GCAcuGCCGUAUGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 135558 | 0.71 | 0.817836 |
Target: 5'- cGGGCGGACGaCGgggaGGCGGC---CGUCa -3' miRNA: 3'- -CCCGCCUGUaGCa---CUGCCGuauGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 229671 | 0.75 | 0.631019 |
Target: 5'- aGGUGGGCGUCGgGGCGcGCGUcCGCUc -3' miRNA: 3'- cCCGCCUGUAGCaCUGC-CGUAuGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 68158 | 0.75 | 0.601515 |
Target: 5'- -cGCGGugAUCGcGGCGGCGcGCGCg -3' miRNA: 3'- ccCGCCugUAGCaCUGCCGUaUGCGg -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 24977 | 0.75 | 0.598572 |
Target: 5'- uGGGUGGGCGUCccucggccuuuuguGUGugGGCGUccguggGCGCg -3' miRNA: 3'- -CCCGCCUGUAG--------------CACugCCGUA------UGCGg -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 166137 | 0.77 | 0.505411 |
Target: 5'- cGGCaGaGACGUCGgcgccGGCGGCAgcgGCGCCg -3' miRNA: 3'- cCCG-C-CUGUAGCa----CUGCCGUa--UGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 62379 | 0.77 | 0.486925 |
Target: 5'- cGGCGGGgGUgGUGGCGGCGggggugGCgGCCg -3' miRNA: 3'- cCCGCCUgUAgCACUGCCGUa-----UG-CGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 193647 | 0.77 | 0.486925 |
Target: 5'- cGGGaCGGAgGUCucUGugGGCAaGCGCCa -3' miRNA: 3'- -CCC-GCCUgUAGc-ACugCCGUaUGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 99932 | 0.78 | 0.459815 |
Target: 5'- aGGGCGGGCGcCGa-ACGGCAU-CGCCg -3' miRNA: 3'- -CCCGCCUGUaGCacUGCCGUAuGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 60693 | 0.79 | 0.424962 |
Target: 5'- aGGGCGaGACG--GUGAUGGCGcUGCGCCc -3' miRNA: 3'- -CCCGC-CUGUagCACUGCCGU-AUGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 136573 | 0.73 | 0.698575 |
Target: 5'- aGGGUuccGGCAUCGUGACcguggggcucaguGGCGUugGCUc -3' miRNA: 3'- -CCCGc--CUGUAGCACUG-------------CCGUAugCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 123026 | 0.72 | 0.756325 |
Target: 5'- -aGCGuGACGUCc-GACGGCGcUGCGCCu -3' miRNA: 3'- ccCGC-CUGUAGcaCUGCCGU-AUGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 154151 | 0.71 | 0.809457 |
Target: 5'- cGGGCGGugG-CGgcGGCGGCGgcgGCGgCu -3' miRNA: 3'- -CCCGCCugUaGCa-CUGCCGUa--UGCgG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 200789 | 0.71 | 0.809457 |
Target: 5'- cGGCGGugG-CGggcGACGGCGUcucgGCGCg -3' miRNA: 3'- cCCGCCugUaGCa--CUGCCGUA----UGCGg -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 48867 | 0.71 | 0.809457 |
Target: 5'- aGGGaGGACGUCGUGcGCGGUuguUAC-CCu -3' miRNA: 3'- -CCCgCCUGUAGCAC-UGCCGu--AUGcGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 188256 | 0.71 | 0.800929 |
Target: 5'- aGGCGGACAg-GUcGGCGGuCAucUugGCCa -3' miRNA: 3'- cCCGCCUGUagCA-CUGCC-GU--AugCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 173439 | 0.72 | 0.79226 |
Target: 5'- gGGGUGacguucGACGUaccgGUGGCGGCGcucgACGCCa -3' miRNA: 3'- -CCCGC------CUGUAg---CACUGCCGUa---UGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 120222 | 0.72 | 0.783456 |
Target: 5'- uGGGCGGACcgcgCGUGAuCGGCGa--GUCu -3' miRNA: 3'- -CCCGCCUGua--GCACU-GCCGUaugCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 225057 | 0.72 | 0.774527 |
Target: 5'- -aGCGcACGUCGUGAUGGCGgcCGCUc -3' miRNA: 3'- ccCGCcUGUAGCACUGCCGUauGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 199555 | 0.72 | 0.774527 |
Target: 5'- cGGGCGcGcccCAUCGUGccGCGGUccagACGCCg -3' miRNA: 3'- -CCCGC-Cu--GUAGCAC--UGCCGua--UGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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