miRNA display CGI


Results 41 - 60 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16214 3' -55.5 NC_004065.1 + 166137 0.77 0.505411
Target:  5'- cGGCaGaGACGUCGgcgccGGCGGCAgcgGCGCCg -3'
miRNA:   3'- cCCG-C-CUGUAGCa----CUGCCGUa--UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 62379 0.77 0.486925
Target:  5'- cGGCGGGgGUgGUGGCGGCGggggugGCgGCCg -3'
miRNA:   3'- cCCGCCUgUAgCACUGCCGUa-----UG-CGG- -5'
16214 3' -55.5 NC_004065.1 + 193647 0.77 0.486925
Target:  5'- cGGGaCGGAgGUCucUGugGGCAaGCGCCa -3'
miRNA:   3'- -CCC-GCCUgUAGc-ACugCCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 99932 0.78 0.459815
Target:  5'- aGGGCGGGCGcCGa-ACGGCAU-CGCCg -3'
miRNA:   3'- -CCCGCCUGUaGCacUGCCGUAuGCGG- -5'
16214 3' -55.5 NC_004065.1 + 60693 0.79 0.424962
Target:  5'- aGGGCGaGACG--GUGAUGGCGcUGCGCCc -3'
miRNA:   3'- -CCCGC-CUGUagCACUGCCGU-AUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 173439 0.72 0.79226
Target:  5'- gGGGUGacguucGACGUaccgGUGGCGGCGcucgACGCCa -3'
miRNA:   3'- -CCCGC------CUGUAg---CACUGCCGUa---UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 188256 0.71 0.800929
Target:  5'- aGGCGGACAg-GUcGGCGGuCAucUugGCCa -3'
miRNA:   3'- cCCGCCUGUagCA-CUGCC-GU--AugCGG- -5'
16214 3' -55.5 NC_004065.1 + 101575 0.7 0.867478
Target:  5'- uGGUGGACA-CGUauucggacagggagaGGCGGCGcGCGUCg -3'
miRNA:   3'- cCCGCCUGUaGCA---------------CUGCCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 146756 0.7 0.849723
Target:  5'- -uGUGGGCGUCG--GCGGCGUcUGCCg -3'
miRNA:   3'- ccCGCCUGUAGCacUGCCGUAuGCGG- -5'
16214 3' -55.5 NC_004065.1 + 63710 0.7 0.849723
Target:  5'- cGGGCcGugAUCGccUGGUGGUcgGCGCCg -3'
miRNA:   3'- -CCCGcCugUAGC--ACUGCCGuaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 124978 0.7 0.849723
Target:  5'- aGGGCGGcCAgaggcgcgggUCGUGcaGCGcGCucacGUACGCCa -3'
miRNA:   3'- -CCCGCCuGU----------AGCAC--UGC-CG----UAUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 200966 0.7 0.848959
Target:  5'- cGGCGGcuccaggaucgguGCGUgGUGACGGgucgcgACGCCg -3'
miRNA:   3'- cCCGCC-------------UGUAgCACUGCCgua---UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 195371 0.7 0.842009
Target:  5'- cGGCcuuccuGGACAcCGUGACGGCcgAgGUCu -3'
miRNA:   3'- cCCG------CCUGUaGCACUGCCGuaUgCGG- -5'
16214 3' -55.5 NC_004065.1 + 103540 0.7 0.842009
Target:  5'- uGGGUGGAaacaguUCGUGACGGCGcaauaAC-CCa -3'
miRNA:   3'- -CCCGCCUgu----AGCACUGCCGUa----UGcGG- -5'
16214 3' -55.5 NC_004065.1 + 67366 0.71 0.826059
Target:  5'- cGGUGuacauCAUCGUGACGGUcgGCGUg -3'
miRNA:   3'- cCCGCcu---GUAGCACUGCCGuaUGCGg -5'
16214 3' -55.5 NC_004065.1 + 131829 0.71 0.825244
Target:  5'- cGGGCuGugGUagaacagCGUcuCGGCGUGCGCCg -3'
miRNA:   3'- -CCCGcCugUA-------GCAcuGCCGUAUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 135558 0.71 0.817836
Target:  5'- cGGGCGGACGaCGgggaGGCGGC---CGUCa -3'
miRNA:   3'- -CCCGCCUGUaGCa---CUGCCGuauGCGG- -5'
16214 3' -55.5 NC_004065.1 + 154151 0.71 0.809457
Target:  5'- cGGGCGGugG-CGgcGGCGGCGgcgGCGgCu -3'
miRNA:   3'- -CCCGCCugUaGCa-CUGCCGUa--UGCgG- -5'
16214 3' -55.5 NC_004065.1 + 200789 0.71 0.809457
Target:  5'- cGGCGGugG-CGggcGACGGCGUcucgGCGCg -3'
miRNA:   3'- cCCGCCugUaGCa--CUGCCGUA----UGCGg -5'
16214 3' -55.5 NC_004065.1 + 48867 0.71 0.809457
Target:  5'- aGGGaGGACGUCGUGcGCGGUuguUAC-CCu -3'
miRNA:   3'- -CCCgCCUGUAGCAC-UGCCGu--AUGcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.