miRNA display CGI


Results 61 - 80 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16214 3' -55.5 NC_004065.1 + 135558 0.71 0.817836
Target:  5'- cGGGCGGACGaCGgggaGGCGGC---CGUCa -3'
miRNA:   3'- -CCCGCCUGUaGCa---CUGCCGuauGCGG- -5'
16214 3' -55.5 NC_004065.1 + 131829 0.71 0.825244
Target:  5'- cGGGCuGugGUagaacagCGUcuCGGCGUGCGCCg -3'
miRNA:   3'- -CCCGcCugUA-------GCAcuGCCGUAUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 49655 0.69 0.88544
Target:  5'- cGGUGGACcaguuuccCGUGGCGGUgc-CGCCg -3'
miRNA:   3'- cCCGCCUGua------GCACUGCCGuauGCGG- -5'
16214 3' -55.5 NC_004065.1 + 25395 0.69 0.891979
Target:  5'- gGGGCGGACAg---GGCGcauauccauGCAgACGCCc -3'
miRNA:   3'- -CCCGCCUGUagcaCUGC---------CGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 200875 0.69 0.898307
Target:  5'- cGGGCGGugGcgaaucgucggUCGUGuaGCGGUAc-UGCCg -3'
miRNA:   3'- -CCCGCCugU-----------AGCAC--UGCCGUauGCGG- -5'
16214 3' -55.5 NC_004065.1 + 41930 0.69 0.898307
Target:  5'- uGGCGGugaccuacuacGCGUCGUGcACGGCcggguucucgACGCUg -3'
miRNA:   3'- cCCGCC-----------UGUAGCAC-UGCCGua--------UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 109869 0.69 0.898307
Target:  5'- cGGGCGGugccaccgGCGUCGccGCGGCc-GCGUCg -3'
miRNA:   3'- -CCCGCC--------UGUAGCacUGCCGuaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 110219 0.69 0.898307
Target:  5'- aGGGaagaGGGCuUCGccGGCGGC-UGCGUCa -3'
miRNA:   3'- -CCCg---CCUGuAGCa-CUGCCGuAUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 91189 0.69 0.902001
Target:  5'- -cGCGGAagcgccgucggCGUGcGCGGCAUcgGCGCCg -3'
miRNA:   3'- ccCGCCUgua--------GCAC-UGCCGUA--UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 151426 0.69 0.904421
Target:  5'- cGGCGcgacGACGUCGcguucGACGGCG-ACGUCg -3'
miRNA:   3'- cCCGC----CUGUAGCa----CUGCCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 126231 0.69 0.88544
Target:  5'- aGGCGGGCGUcuucacgccCGUG-CGGCGgaucgaGCCg -3'
miRNA:   3'- cCCGCCUGUA---------GCACuGCCGUaug---CGG- -5'
16214 3' -55.5 NC_004065.1 + 81892 0.7 0.871744
Target:  5'- cGGCGGGCGUgcUGAgguCGGCGUggACGUCg -3'
miRNA:   3'- cCCGCCUGUAgcACU---GCCGUA--UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 67366 0.71 0.826059
Target:  5'- cGGUGuacauCAUCGUGACGGUcgGCGUg -3'
miRNA:   3'- cCCGCcu---GUAGCACUGCCGuaUGCGg -5'
16214 3' -55.5 NC_004065.1 + 103540 0.7 0.842009
Target:  5'- uGGGUGGAaacaguUCGUGACGGCGcaauaAC-CCa -3'
miRNA:   3'- -CCCGCCUgu----AGCACUGCCGUa----UGcGG- -5'
16214 3' -55.5 NC_004065.1 + 195371 0.7 0.842009
Target:  5'- cGGCcuuccuGGACAcCGUGACGGCcgAgGUCu -3'
miRNA:   3'- cCCG------CCUGUaGCACUGCCGuaUgCGG- -5'
16214 3' -55.5 NC_004065.1 + 200966 0.7 0.848959
Target:  5'- cGGCGGcuccaggaucgguGCGUgGUGACGGgucgcgACGCCg -3'
miRNA:   3'- cCCGCC-------------UGUAgCACUGCCgua---UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 124978 0.7 0.849723
Target:  5'- aGGGCGGcCAgaggcgcgggUCGUGcaGCGcGCucacGUACGCCa -3'
miRNA:   3'- -CCCGCCuGU----------AGCAC--UGC-CG----UAUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 63710 0.7 0.849723
Target:  5'- cGGGCcGugAUCGccUGGUGGUcgGCGCCg -3'
miRNA:   3'- -CCCGcCugUAGC--ACUGCCGuaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 146756 0.7 0.849723
Target:  5'- -uGUGGGCGUCG--GCGGCGUcUGCCg -3'
miRNA:   3'- ccCGCCUGUAGCacUGCCGUAuGCGG- -5'
16214 3' -55.5 NC_004065.1 + 101575 0.7 0.867478
Target:  5'- uGGUGGACA-CGUauucggacagggagaGGCGGCGcGCGUCg -3'
miRNA:   3'- cCCGCCUGUaGCA---------------CUGCCGUaUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.