Results 81 - 100 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16214 | 3' | -55.5 | NC_004065.1 | + | 36083 | 0.68 | 0.931218 |
Target: 5'- aGGaGCGG-CGUuaguggaaacaacCGUGGCGGCAacgGgGCCg -3' miRNA: 3'- -CC-CGCCuGUA-------------GCACUGCCGUa--UgCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 47861 | 0.68 | 0.93171 |
Target: 5'- uGGCGG-CGUCGUaGugGGagaagACGUCg -3' miRNA: 3'- cCCGCCuGUAGCA-CugCCgua--UGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 161838 | 0.68 | 0.93171 |
Target: 5'- cGGGCGGACGgggacggguUCG-GAgGGaGUACGUa -3' miRNA: 3'- -CCCGCCUGU---------AGCaCUgCCgUAUGCGg -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 115633 | 0.68 | 0.936036 |
Target: 5'- aGGCGGGgua-GgcugGACGGCAUgggucucGCGCCg -3' miRNA: 3'- cCCGCCUguagCa---CUGCCGUA-------UGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 118718 | 0.68 | 0.936505 |
Target: 5'- aGGgGGAgCGUCGUGucCGGCAggucuCGCa -3' miRNA: 3'- cCCgCCU-GUAGCACu-GCCGUau---GCGg -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 151426 | 0.69 | 0.904421 |
Target: 5'- cGGCGcgacGACGUCGcguucGACGGCG-ACGUCg -3' miRNA: 3'- cCCGC----CUGUAGCa----CUGCCGUaUGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 91189 | 0.69 | 0.902001 |
Target: 5'- -cGCGGAagcgccgucggCGUGcGCGGCAUcgGCGCCg -3' miRNA: 3'- ccCGCCUgua--------GCAC-UGCCGUA--UGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 110219 | 0.69 | 0.898307 |
Target: 5'- aGGGaagaGGGCuUCGccGGCGGC-UGCGUCa -3' miRNA: 3'- -CCCg---CCUGuAGCa-CUGCCGuAUGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 63710 | 0.7 | 0.849723 |
Target: 5'- cGGGCcGugAUCGccUGGUGGUcgGCGCCg -3' miRNA: 3'- -CCCGcCugUAGC--ACUGCCGuaUGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 146756 | 0.7 | 0.849723 |
Target: 5'- -uGUGGGCGUCG--GCGGCGUcUGCCg -3' miRNA: 3'- ccCGCCUGUAGCacUGCCGUAuGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 101575 | 0.7 | 0.867478 |
Target: 5'- uGGUGGACA-CGUauucggacagggagaGGCGGCGcGCGUCg -3' miRNA: 3'- cCCGCCUGUaGCA---------------CUGCCGUaUGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 81892 | 0.7 | 0.871744 |
Target: 5'- cGGCGGGCGUgcUGAgguCGGCGUggACGUCg -3' miRNA: 3'- cCCGCCUGUAgcACU---GCCGUA--UGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 126231 | 0.69 | 0.88544 |
Target: 5'- aGGCGGGCGUcuucacgccCGUG-CGGCGgaucgaGCCg -3' miRNA: 3'- cCCGCCUGUA---------GCACuGCCGUaug---CGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 49655 | 0.69 | 0.88544 |
Target: 5'- cGGUGGACcaguuuccCGUGGCGGUgc-CGCCg -3' miRNA: 3'- cCCGCCUGua------GCACUGCCGuauGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 25395 | 0.69 | 0.891979 |
Target: 5'- gGGGCGGACAg---GGCGcauauccauGCAgACGCCc -3' miRNA: 3'- -CCCGCCUGUagcaCUGC---------CGUaUGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 200875 | 0.69 | 0.898307 |
Target: 5'- cGGGCGGugGcgaaucgucggUCGUGuaGCGGUAc-UGCCg -3' miRNA: 3'- -CCCGCCugU-----------AGCAC--UGCCGUauGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 41930 | 0.69 | 0.898307 |
Target: 5'- uGGCGGugaccuacuacGCGUCGUGcACGGCcggguucucgACGCUg -3' miRNA: 3'- cCCGCC-----------UGUAGCAC-UGCCGua--------UGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 109869 | 0.69 | 0.898307 |
Target: 5'- cGGGCGGugccaccgGCGUCGccGCGGCc-GCGUCg -3' miRNA: 3'- -CCCGCC--------UGUAGCacUGCCGuaUGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 205432 | 0.66 | 0.97765 |
Target: 5'- cGGCGG-CGgcgGUGGCGGCGacgacACGCg -3' miRNA: 3'- cCCGCCuGUag-CACUGCCGUa----UGCGg -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 157011 | 0.77 | 0.486925 |
Target: 5'- aGGGCGucuCGcUCGUGGCGGCAUcguCGCCc -3' miRNA: 3'- -CCCGCcu-GU-AGCACUGCCGUAu--GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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