miRNA display CGI


Results 101 - 120 of 194 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16214 3' -55.5 NC_004065.1 + 101426 0.73 0.737716
Target:  5'- gGGGCGGcugGCG-CGUG-CGG-AUGCGCCu -3'
miRNA:   3'- -CCCGCC---UGUaGCACuGCCgUAUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 18982 0.73 0.728279
Target:  5'- cGGGUGGACAUCugucaagaccUGACGGCG-ACGUUc -3'
miRNA:   3'- -CCCGCCUGUAGc---------ACUGCCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 139851 0.72 0.765481
Target:  5'- aGGCGGGCGaCGgcggaGGCGGCGga-GCCg -3'
miRNA:   3'- cCCGCCUGUaGCa----CUGCCGUaugCGG- -5'
16214 3' -55.5 NC_004065.1 + 192767 0.72 0.765481
Target:  5'- gGGGUGGuCGUCGUGucCGGUuuuCGCUg -3'
miRNA:   3'- -CCCGCCuGUAGCACu-GCCGuauGCGG- -5'
16214 3' -55.5 NC_004065.1 + 174119 0.72 0.774527
Target:  5'- cGGcGCGGACucCGUGagagguGCGGCAUcggccuggACGCCg -3'
miRNA:   3'- -CC-CGCCUGuaGCAC------UGCCGUA--------UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 157954 0.72 0.79226
Target:  5'- aGGGUGGcguccaccggcuGgGUCGUGAUGGCGUACa-- -3'
miRNA:   3'- -CCCGCC------------UgUAGCACUGCCGUAUGcgg -5'
16214 3' -55.5 NC_004065.1 + 191972 0.72 0.79226
Target:  5'- cGGCGGcACGUUG-GACGGguCGUGgGCCa -3'
miRNA:   3'- cCCGCC-UGUAGCaCUGCC--GUAUgCGG- -5'
16214 3' -55.5 NC_004065.1 + 31006 0.71 0.809457
Target:  5'- gGGGUGGcgagauggagagGCcg-GUGACGGCGaACGCCa -3'
miRNA:   3'- -CCCGCC------------UGuagCACUGCCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 34614 0.74 0.689848
Target:  5'- cGGCGGgaGCGUaCGUGuACGGCu--CGCCg -3'
miRNA:   3'- cCCGCC--UGUA-GCAC-UGCCGuauGCGG- -5'
16214 3' -55.5 NC_004065.1 + 130588 0.74 0.680109
Target:  5'- aGGcGCGcGAUGUCGaGGCGGCGUcUGCCg -3'
miRNA:   3'- -CC-CGC-CUGUAGCaCUGCCGUAuGCGG- -5'
16214 3' -55.5 NC_004065.1 + 205432 0.66 0.97765
Target:  5'- cGGCGG-CGgcgGUGGCGGCGacgacACGCg -3'
miRNA:   3'- cCCGCCuGUag-CACUGCCGUa----UGCGg -5'
16214 3' -55.5 NC_004065.1 + 157011 0.77 0.486925
Target:  5'- aGGGCGucuCGcUCGUGGCGGCAUcguCGCCc -3'
miRNA:   3'- -CCCGCcu-GU-AGCACUGCCGUAu--GCGG- -5'
16214 3' -55.5 NC_004065.1 + 191384 0.76 0.55284
Target:  5'- aGGGCGcGuACAUCGUGAUGGgAU-CGUCg -3'
miRNA:   3'- -CCCGC-C-UGUAGCACUGCCgUAuGCGG- -5'
16214 3' -55.5 NC_004065.1 + 28915 0.76 0.558628
Target:  5'- aGGCGGACAUCGUGccuCGGUucaaggaaagcCGCCg -3'
miRNA:   3'- cCCGCCUGUAGCACu--GCCGuau--------GCGG- -5'
16214 3' -55.5 NC_004065.1 + 111851 0.75 0.601515
Target:  5'- cGGCGG-CAgcCGUGACGGCcgcCGCCg -3'
miRNA:   3'- cCCGCCuGUa-GCACUGCCGuauGCGG- -5'
16214 3' -55.5 NC_004065.1 + 130076 0.75 0.621175
Target:  5'- cGGCGGugGUCGacuACGGCG-AUGCCg -3'
miRNA:   3'- cCCGCCugUAGCac-UGCCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 171957 0.74 0.640865
Target:  5'- aGGCGGGCG--GUGGCGGCGgcgGCGgCg -3'
miRNA:   3'- cCCGCCUGUagCACUGCCGUa--UGCgG- -5'
16214 3' -55.5 NC_004065.1 + 24509 0.74 0.650704
Target:  5'- aGGGCGGuCAUCGUG--GGCAUuauCGCa -3'
miRNA:   3'- -CCCGCCuGUAGCACugCCGUAu--GCGg -5'
16214 3' -55.5 NC_004065.1 + 138327 0.74 0.660529
Target:  5'- -cGCGGACAUCGUGGCcGCG-AUGUCg -3'
miRNA:   3'- ccCGCCUGUAGCACUGcCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 79387 0.74 0.674247
Target:  5'- uGGGCGGACGcgcugaaacacacgaUCGUgGACaGCAUA-GCCg -3'
miRNA:   3'- -CCCGCCUGU---------------AGCA-CUGcCGUAUgCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.