miRNA display CGI


Results 21 - 40 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16214 3' -55.5 NC_004065.1 + 105227 0.71 0.817836
Target:  5'- cGGCGGACGUCGgacgaggaGAUGGUG-GCGCa -3'
miRNA:   3'- cCCGCCUGUAGCa-------CUGCCGUaUGCGg -5'
16214 3' -55.5 NC_004065.1 + 157954 0.72 0.79226
Target:  5'- aGGGUGGcguccaccggcuGgGUCGUGAUGGCGUACa-- -3'
miRNA:   3'- -CCCGCC------------UgUAGCACUGCCGUAUGcgg -5'
16214 3' -55.5 NC_004065.1 + 130588 0.74 0.680109
Target:  5'- aGGcGCGcGAUGUCGaGGCGGCGUcUGCCg -3'
miRNA:   3'- -CC-CGC-CUGUAGCaCUGCCGUAuGCGG- -5'
16214 3' -55.5 NC_004065.1 + 28915 0.76 0.558628
Target:  5'- aGGCGGACAUCGUGccuCGGUucaaggaaagcCGCCg -3'
miRNA:   3'- cCCGCCUGUAGCACu--GCCGuau--------GCGG- -5'
16214 3' -55.5 NC_004065.1 + 153623 0.69 0.905021
Target:  5'- cGGGCGG-CGccacUCGgacGGCGGCGagcucauccgcggcgGCGCCg -3'
miRNA:   3'- -CCCGCCuGU----AGCa--CUGCCGUa--------------UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 163440 0.7 0.878694
Target:  5'- -cGCGucCAUCGUG-CGGCAgGCGCUc -3'
miRNA:   3'- ccCGCcuGUAGCACuGCCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 192767 0.72 0.765481
Target:  5'- gGGGUGGuCGUCGUGucCGGUuuuCGCUg -3'
miRNA:   3'- -CCCGCCuGUAGCACu-GCCGuauGCGG- -5'
16214 3' -55.5 NC_004065.1 + 191384 0.76 0.55284
Target:  5'- aGGGCGcGuACAUCGUGAUGGgAU-CGUCg -3'
miRNA:   3'- -CCCGC-C-UGUAGCACUGCCgUAuGCGG- -5'
16214 3' -55.5 NC_004065.1 + 102028 0.7 0.878694
Target:  5'- cGGCGGGCcaccUCgGUGACccgcggcggccgGGCGUuaGCGCCg -3'
miRNA:   3'- cCCGCCUGu---AG-CACUG------------CCGUA--UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 157011 0.77 0.486925
Target:  5'- aGGGCGucuCGcUCGUGGCGGCAUcguCGCCc -3'
miRNA:   3'- -CCCGCcu-GU-AGCACUGCCGUAu--GCGG- -5'
16214 3' -55.5 NC_004065.1 + 174119 0.72 0.774527
Target:  5'- cGGcGCGGACucCGUGagagguGCGGCAUcggccuggACGCCg -3'
miRNA:   3'- -CC-CGCCUGuaGCAC------UGCCGUA--------UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 41265 0.71 0.834119
Target:  5'- uGGGCGGucGCgAUCGcccugGugGGCuucgccgccGUGCGCCu -3'
miRNA:   3'- -CCCGCC--UG-UAGCa----CugCCG---------UAUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 115584 0.72 0.756325
Target:  5'- cGGCGGugGUgGUGGCGGCGggagAUGa- -3'
miRNA:   3'- cCCGCCugUAgCACUGCCGUa---UGCgg -5'
16214 3' -55.5 NC_004065.1 + 34614 0.74 0.689848
Target:  5'- cGGCGGgaGCGUaCGUGuACGGCu--CGCCg -3'
miRNA:   3'- cCCGCC--UGUA-GCAC-UGCCGuauGCGG- -5'
16214 3' -55.5 NC_004065.1 + 24509 0.74 0.650704
Target:  5'- aGGGCGGuCAUCGUG--GGCAUuauCGCa -3'
miRNA:   3'- -CCCGCCuGUAGCACugCCGUAu--GCGg -5'
16214 3' -55.5 NC_004065.1 + 111851 0.75 0.601515
Target:  5'- cGGCGG-CAgcCGUGACGGCcgcCGCCg -3'
miRNA:   3'- cCCGCCuGUa-GCACUGCCGuauGCGG- -5'
16214 3' -55.5 NC_004065.1 + 23541 0.68 0.921456
Target:  5'- uGGGUGGGCuaCGUGACGa---ACGCCc -3'
miRNA:   3'- -CCCGCCUGuaGCACUGCcguaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 27209 0.69 0.910318
Target:  5'- uGGCGGcgGUCGUGGuCGGCA-GCGUg -3'
miRNA:   3'- cCCGCCugUAGCACU-GCCGUaUGCGg -5'
16214 3' -55.5 NC_004065.1 + 200300 0.69 0.891979
Target:  5'- cGGaGGAucuCAUCGUccugGGCGGCGUcCGCCg -3'
miRNA:   3'- cCCgCCU---GUAGCA----CUGCCGUAuGCGG- -5'
16214 3' -55.5 NC_004065.1 + 85552 0.7 0.878694
Target:  5'- cGGCGcACGUCGUGuuCGGCGccaugguCGCCu -3'
miRNA:   3'- cCCGCcUGUAGCACu-GCCGUau-----GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.