Results 41 - 60 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16214 | 3' | -55.5 | NC_004065.1 | + | 35196 | 0.69 | 0.898307 |
Target: 5'- cGGCcuGGAgAaCGUGGCGGCcacCGCCa -3' miRNA: 3'- cCCG--CCUgUaGCACUGCCGuauGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 192767 | 0.72 | 0.765481 |
Target: 5'- gGGGUGGuCGUCGUGucCGGUuuuCGCUg -3' miRNA: 3'- -CCCGCCuGUAGCACu-GCCGuauGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 191384 | 0.76 | 0.55284 |
Target: 5'- aGGGCGcGuACAUCGUGAUGGgAU-CGUCg -3' miRNA: 3'- -CCCGC-C-UGUAGCACUGCCgUAuGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 31616 | 0.69 | 0.891979 |
Target: 5'- -cGUGGACGgcaaguUCGUG-CGGCugacgACGCCg -3' miRNA: 3'- ccCGCCUGU------AGCACuGCCGua---UGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 157011 | 0.77 | 0.486925 |
Target: 5'- aGGGCGucuCGcUCGUGGCGGCAUcguCGCCc -3' miRNA: 3'- -CCCGCcu-GU-AGCACUGCCGUAu--GCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 38426 | 0.67 | 0.945436 |
Target: 5'- cGGGagaGGGCGUCuacgacGACGGUuuucgcGCGCCg -3' miRNA: 3'- -CCCg--CCUGUAGca----CUGCCGua----UGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 111851 | 0.75 | 0.601515 |
Target: 5'- cGGCGG-CAgcCGUGACGGCcgcCGCCg -3' miRNA: 3'- cCCGCCuGUa-GCACUGCCGuauGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 121061 | 0.68 | 0.936505 |
Target: 5'- cGGaGCcuGGCGUCGUGccccaggucguCGGCGUACuGCCg -3' miRNA: 3'- -CC-CGc-CUGUAGCACu----------GCCGUAUG-CGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 120222 | 0.68 | 0.93171 |
Target: 5'- aGGGCGuucuCGUCGaacgUGcccGCGGCGUaGCGCCu -3' miRNA: 3'- -CCCGCcu--GUAGC----AC---UGCCGUA-UGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 165083 | 0.68 | 0.927205 |
Target: 5'- aGGCGGugGgucaguaggcgccgUCGUcucugaGGCGGCGUcccgcccggcgacugGCGCCg -3' miRNA: 3'- cCCGCCugU--------------AGCA------CUGCCGUA---------------UGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 68543 | 0.68 | 0.926694 |
Target: 5'- aGGCGGcgGCGgagGUGACGGCGUcccgaAgGCCc -3' miRNA: 3'- cCCGCC--UGUag-CACUGCCGUA-----UgCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 23541 | 0.68 | 0.921456 |
Target: 5'- uGGGUGGGCuaCGUGACGa---ACGCCc -3' miRNA: 3'- -CCCGCCUGuaGCACUGCcguaUGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 27209 | 0.69 | 0.910318 |
Target: 5'- uGGCGGcgGUCGUGGuCGGCA-GCGUg -3' miRNA: 3'- cCCGCCugUAGCACU-GCCGUaUGCGg -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 28714 | 0.7 | 0.881417 |
Target: 5'- aGGGCGGAgAUCcUGuccgaggaggagaccGCGGUGgcggACGCCu -3' miRNA: 3'- -CCCGCCUgUAGcAC---------------UGCCGUa---UGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 102028 | 0.7 | 0.878694 |
Target: 5'- cGGCGGGCcaccUCgGUGACccgcggcggccgGGCGUuaGCGCCg -3' miRNA: 3'- cCCGCCUGu---AG-CACUG------------CCGUA--UGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 105227 | 0.71 | 0.817836 |
Target: 5'- cGGCGGACGUCGgacgaggaGAUGGUG-GCGCa -3' miRNA: 3'- cCCGCCUGUAGCa-------CUGCCGUaUGCGg -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 157954 | 0.72 | 0.79226 |
Target: 5'- aGGGUGGcguccaccggcuGgGUCGUGAUGGCGUACa-- -3' miRNA: 3'- -CCCGCC------------UgUAGCACUGCCGUAUGcgg -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 115584 | 0.72 | 0.756325 |
Target: 5'- cGGCGGugGUgGUGGCGGCGggagAUGa- -3' miRNA: 3'- cCCGCCugUAgCACUGCCGUa---UGCgg -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 34614 | 0.74 | 0.689848 |
Target: 5'- cGGCGGgaGCGUaCGUGuACGGCu--CGCCg -3' miRNA: 3'- cCCGCC--UGUA-GCAC-UGCCGuauGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 24509 | 0.74 | 0.650704 |
Target: 5'- aGGGCGGuCAUCGUG--GGCAUuauCGCa -3' miRNA: 3'- -CCCGCCuGUAGCACugCCGUAu--GCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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