miRNA display CGI


Results 61 - 80 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16214 3' -55.5 NC_004065.1 + 27209 0.69 0.910318
Target:  5'- uGGCGGcgGUCGUGGuCGGCA-GCGUg -3'
miRNA:   3'- cCCGCCugUAGCACU-GCCGUaUGCGg -5'
16214 3' -55.5 NC_004065.1 + 39034 0.68 0.923578
Target:  5'- uGGGCGaACAguacuUCGUGACcccgcacacggagaaGGCAUucauCGCCu -3'
miRNA:   3'- -CCCGCcUGU-----AGCACUG---------------CCGUAu---GCGG- -5'
16214 3' -55.5 NC_004065.1 + 130076 0.75 0.621175
Target:  5'- cGGCGGugGUCGacuACGGCG-AUGCCg -3'
miRNA:   3'- cCCGCCugUAGCac-UGCCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 138327 0.74 0.660529
Target:  5'- -cGCGGACAUCGUGGCcGCG-AUGUCg -3'
miRNA:   3'- ccCGCCUGUAGCACUGcCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 18982 0.73 0.728279
Target:  5'- cGGGUGGACAUCugucaagaccUGACGGCG-ACGUUc -3'
miRNA:   3'- -CCCGCCUGUAGc---------ACUGCCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 65440 0.72 0.76
Target:  5'- cGGCGGcCGUgGUGgcucuggagcgcgaaGCGGUcgGCGCCg -3'
miRNA:   3'- cCCGCCuGUAgCAC---------------UGCCGuaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 191972 0.72 0.79226
Target:  5'- cGGCGGcACGUUG-GACGGguCGUGgGCCa -3'
miRNA:   3'- cCCGCC-UGUAGCaCUGCC--GUAUgCGG- -5'
16214 3' -55.5 NC_004065.1 + 41265 0.71 0.834119
Target:  5'- uGGGCGGucGCgAUCGcccugGugGGCuucgccgccGUGCGCCu -3'
miRNA:   3'- -CCCGCC--UG-UAGCa----CugCCG---------UAUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 163440 0.7 0.878694
Target:  5'- -cGCGucCAUCGUG-CGGCAgGCGCUc -3'
miRNA:   3'- ccCGCcuGUAGCACuGCCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 112969 0.69 0.891335
Target:  5'- cGGcCGaGACGcaagaucagaucuUCGUGACGGCGUuCGCg -3'
miRNA:   3'- cCC-GC-CUGU-------------AGCACUGCCGUAuGCGg -5'
16214 3' -55.5 NC_004065.1 + 96138 0.66 0.970034
Target:  5'- aGGGUGGccCGUCGUuccgccCGGC--GCGCCg -3'
miRNA:   3'- -CCCGCCu-GUAGCAcu----GCCGuaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 118017 0.66 0.967125
Target:  5'- cGGGCGaGAaacucuuguUGUCGUaGGCGGCccccucgaGCGCCu -3'
miRNA:   3'- -CCCGC-CU---------GUAGCA-CUGCCGua------UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 162446 0.68 0.926694
Target:  5'- cGGCGaGaucaGCGUCGUG-CGGCA-GCGCg -3'
miRNA:   3'- cCCGC-C----UGUAGCACuGCCGUaUGCGg -5'
16214 3' -55.5 NC_004065.1 + 78839 0.68 0.93171
Target:  5'- aGGCGGAgAagGguaggaagGGCGGCcgGCGCg -3'
miRNA:   3'- cCCGCCUgUagCa-------CUGCCGuaUGCGg -5'
16214 3' -55.5 NC_004065.1 + 121061 0.68 0.936505
Target:  5'- cGGaGCcuGGCGUCGUGccccaggucguCGGCGUACuGCCg -3'
miRNA:   3'- -CC-CGc-CUGUAGCACu----------GCCGUAUG-CGG- -5'
16214 3' -55.5 NC_004065.1 + 38426 0.67 0.945436
Target:  5'- cGGGagaGGGCGUCuacgacGACGGUuuucgcGCGCCg -3'
miRNA:   3'- -CCCg--CCUGUAGca----CUGCCGua----UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 169854 0.67 0.949576
Target:  5'- cGGGCcaGCGUCGaccugUGcAUGGCGgGCGCCg -3'
miRNA:   3'- -CCCGccUGUAGC-----AC-UGCCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 131028 0.67 0.957214
Target:  5'- cGGCGGAa--CGUGugGGCG-AC-CCu -3'
miRNA:   3'- cCCGCCUguaGCACugCCGUaUGcGG- -5'
16214 3' -55.5 NC_004065.1 + 103724 0.67 0.964022
Target:  5'- uGGCGGGCGugaUCGUGAgcacgcacaccgUGGUgcagGCGCUg -3'
miRNA:   3'- cCCGCCUGU---AGCACU------------GCCGua--UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 203221 0.67 0.964022
Target:  5'- uGGGUGGGC-UCGgagcGACuGuCAUcACGCCg -3'
miRNA:   3'- -CCCGCCUGuAGCa---CUGcC-GUA-UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.