miRNA display CGI


Results 81 - 100 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16214 3' -55.5 NC_004065.1 + 168179 0.68 0.93171
Target:  5'- gGGGCGcGACA-----GCGGCGcgACGCCu -3'
miRNA:   3'- -CCCGC-CUGUagcacUGCCGUa-UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 6926 0.67 0.945436
Target:  5'- -uGCGGGCA-CGgccuCGGCGUcCGCCg -3'
miRNA:   3'- ccCGCCUGUaGCacu-GCCGUAuGCGG- -5'
16214 3' -55.5 NC_004065.1 + 221996 0.67 0.945436
Target:  5'- cGGGCGGACcgugGUCGUGGgucUGGUAguaggACGg- -3'
miRNA:   3'- -CCCGCCUG----UAGCACU---GCCGUa----UGCgg -5'
16214 3' -55.5 NC_004065.1 + 14183 0.67 0.953501
Target:  5'- uGGGauggaaGGGCGUCGUGACGcCuc-CGUCa -3'
miRNA:   3'- -CCCg-----CCUGUAGCACUGCcGuauGCGG- -5'
16214 3' -55.5 NC_004065.1 + 204522 0.67 0.957214
Target:  5'- cGGCGaGAcCGUCGUGGuCGcCAgACGCCu -3'
miRNA:   3'- cCCGC-CU-GUAGCACU-GCcGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 203221 0.67 0.964022
Target:  5'- uGGGUGGGC-UCGgagcGACuGuCAUcACGCCg -3'
miRNA:   3'- -CCCGCCUGuAGCa---CUGcC-GUA-UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 112969 0.69 0.891335
Target:  5'- cGGcCGaGACGcaagaucagaucuUCGUGACGGCGUuCGCg -3'
miRNA:   3'- cCC-GC-CUGU-------------AGCACUGCCGUAuGCGg -5'
16214 3' -55.5 NC_004065.1 + 34614 0.74 0.689848
Target:  5'- cGGCGGgaGCGUaCGUGuACGGCu--CGCCg -3'
miRNA:   3'- cCCGCC--UGUA-GCAC-UGCCGuauGCGG- -5'
16214 3' -55.5 NC_004065.1 + 102028 0.7 0.878694
Target:  5'- cGGCGGGCcaccUCgGUGACccgcggcggccgGGCGUuaGCGCCg -3'
miRNA:   3'- cCCGCCUGu---AG-CACUG------------CCGUA--UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 207795 0.66 0.97529
Target:  5'- uGGGCGccGGCA-CGaUGACGGuCAUcGCGaCCg -3'
miRNA:   3'- -CCCGC--CUGUaGC-ACUGCC-GUA-UGC-GG- -5'
16214 3' -55.5 NC_004065.1 + 30717 0.66 0.97765
Target:  5'- uGGCGGACG-CGuUGAaCGaCGUggACGCCa -3'
miRNA:   3'- cCCGCCUGUaGC-ACU-GCcGUA--UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 41265 0.71 0.834119
Target:  5'- uGGGCGGucGCgAUCGcccugGugGGCuucgccgccGUGCGCCu -3'
miRNA:   3'- -CCCGCC--UG-UAGCa----CugCCG---------UAUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 174119 0.72 0.774527
Target:  5'- cGGcGCGGACucCGUGagagguGCGGCAUcggccuggACGCCg -3'
miRNA:   3'- -CC-CGCCUGuaGCAC------UGCCGUA--------UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 65440 0.72 0.76
Target:  5'- cGGCGGcCGUgGUGgcucuggagcgcgaaGCGGUcgGCGCCg -3'
miRNA:   3'- cCCGCCuGUAgCAC---------------UGCCGuaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 205432 0.66 0.97765
Target:  5'- cGGCGG-CGgcgGUGGCGGCGacgacACGCg -3'
miRNA:   3'- cCCGCCuGUag-CACUGCCGUa----UGCGg -5'
16214 3' -55.5 NC_004065.1 + 138327 0.74 0.660529
Target:  5'- -cGCGGACAUCGUGGCcGCG-AUGUCg -3'
miRNA:   3'- ccCGCCUGUAGCACUGcCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 126231 0.69 0.88544
Target:  5'- aGGCGGGCGUcuucacgccCGUG-CGGCGgaucgaGCCg -3'
miRNA:   3'- cCCGCCUGUA---------GCACuGCCGUaug---CGG- -5'
16214 3' -55.5 NC_004065.1 + 19548 0.67 0.953118
Target:  5'- cGGCaGGAUgaacugcguggguGUCgGUGGCGGCGguaGCGUCg -3'
miRNA:   3'- cCCG-CCUG-------------UAG-CACUGCCGUa--UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 113758 0.67 0.945436
Target:  5'- aGGCcgagGGACAgCGcGGCGGCAgACGaCCg -3'
miRNA:   3'- cCCG----CCUGUaGCaCUGCCGUaUGC-GG- -5'
16214 3' -55.5 NC_004065.1 + 138560 0.67 0.949576
Target:  5'- cGGCGGAC----UGACGGCGacgGUGCCg -3'
miRNA:   3'- cCCGCCUGuagcACUGCCGUa--UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.