Results 1 - 20 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16215 | 3' | -63.8 | NC_004065.1 | + | 110707 | 0.65 | 0.699576 |
Target: 5'- -aGCCGCCgC-CGCGACUCGGccgaguauuuuauGGAUUGg -3' miRNA: 3'- uaCGGCGG-GaGCGCUGGGCU-------------CCUGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 163269 | 0.66 | 0.6912 |
Target: 5'- -cGCCGgcgccUCCUCGCGAUuCCGGuacGGAUCGa -3' miRNA: 3'- uaCGGC-----GGGAGCGCUG-GGCU---CCUGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 87586 | 0.66 | 0.6912 |
Target: 5'- --aUCGCCUUCaUGACCCuGAGGAgCCGg -3' miRNA: 3'- uacGGCGGGAGcGCUGGG-CUCCU-GGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 155195 | 0.66 | 0.6912 |
Target: 5'- -cGCCGCCUcggUCcCGACCCGGGcGucuCCa -3' miRNA: 3'- uaCGGCGGG---AGcGCUGGGCUC-Cu--GGc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 18555 | 0.66 | 0.6912 |
Target: 5'- -cGCCGacgaCCUCuccgGCGACuccuCCGAGGAgCGg -3' miRNA: 3'- uaCGGCg---GGAG----CGCUG----GGCUCCUgGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 116140 | 0.66 | 0.681854 |
Target: 5'- -cGgCGUCCUgCgGCGGCUCG-GGGCCGg -3' miRNA: 3'- uaCgGCGGGA-G-CGCUGGGCuCCUGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 200329 | 0.66 | 0.681854 |
Target: 5'- -cGCCGCUCgaccggCGaUGACaagaaCGAGGACCu -3' miRNA: 3'- uaCGGCGGGa-----GC-GCUGg----GCUCCUGGc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 77995 | 0.66 | 0.672473 |
Target: 5'- -aGCCGCCC-CGgGA-CgGAGGAgCCGu -3' miRNA: 3'- uaCGGCGGGaGCgCUgGgCUCCU-GGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 205896 | 0.66 | 0.663064 |
Target: 5'- -cGUCGCCCUUGaCGGaugggccgCCGAGG-CCGa -3' miRNA: 3'- uaCGGCGGGAGC-GCUg-------GGCUCCuGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 202735 | 0.66 | 0.663064 |
Target: 5'- -gGCCGUUucggCUCGUGuCCCGAGcGCCGu -3' miRNA: 3'- uaCGGCGG----GAGCGCuGGGCUCcUGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 201125 | 0.66 | 0.663064 |
Target: 5'- gAUGuCCGCCUUgucCGcCGACUCGGGGcGCCa -3' miRNA: 3'- -UAC-GGCGGGA---GC-GCUGGGCUCC-UGGc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 85672 | 0.66 | 0.653633 |
Target: 5'- -cGCCGUCgacaUCGCGuaccaGCUCGAGGAgCGa -3' miRNA: 3'- uaCGGCGGg---AGCGC-----UGGGCUCCUgGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 114615 | 0.66 | 0.653633 |
Target: 5'- --aUCGCCCUCGCuacGACCCcgccGGGGACg- -3' miRNA: 3'- uacGGCGGGAGCG---CUGGG----CUCCUGgc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 72087 | 0.66 | 0.653633 |
Target: 5'- -cGCCaCCCUgCGCGGCCUGAucGCCa -3' miRNA: 3'- uaCGGcGGGA-GCGCUGGGCUccUGGc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 100194 | 0.66 | 0.653633 |
Target: 5'- cUGCagGUCCUCGCGcaGCuuGAGGuCCa -3' miRNA: 3'- uACGg-CGGGAGCGC--UGggCUCCuGGc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 202032 | 0.66 | 0.653633 |
Target: 5'- -cGCC-CCCUCGCGggugaaACgCgGGGGACUGa -3' miRNA: 3'- uaCGGcGGGAGCGC------UG-GgCUCCUGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 212826 | 0.66 | 0.653633 |
Target: 5'- -cGCUGCUCaaGgGACCUGGGGACg- -3' miRNA: 3'- uaCGGCGGGagCgCUGGGCUCCUGgc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 127722 | 0.66 | 0.652689 |
Target: 5'- -gGCUGCUCUCGCucUCCGAGuggacgugcgccuGACCGa -3' miRNA: 3'- uaCGGCGGGAGCGcuGGGCUC-------------CUGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 73121 | 0.66 | 0.647968 |
Target: 5'- gGUGCCGgcggaggaucgggacCCCgacgCGCGACCCcAGGAUuCGg -3' miRNA: 3'- -UACGGC---------------GGGa---GCGCUGGGcUCCUG-GC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 188977 | 0.66 | 0.644189 |
Target: 5'- -cGUCGCCg-CGCGGCCCGAGcuCUGc -3' miRNA: 3'- uaCGGCGGgaGCGCUGGGCUCcuGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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