Results 41 - 60 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16215 | 3' | -63.8 | NC_004065.1 | + | 26672 | 0.67 | 0.61583 |
Target: 5'- cGUGUCGCCC--GUGACCCuuuuugauGAGGACgGa -3' miRNA: 3'- -UACGGCGGGagCGCUGGG--------CUCCUGgC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 109831 | 0.67 | 0.61583 |
Target: 5'- -cGCCGUCCUgcUGCGG-CgGGGGGCCa -3' miRNA: 3'- uaCGGCGGGA--GCGCUgGgCUCCUGGc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 100041 | 0.67 | 0.61583 |
Target: 5'- -cGCCGCCCcCGCGGCguuCUGcGGACaCGc -3' miRNA: 3'- uaCGGCGGGaGCGCUG---GGCuCCUG-GC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 184178 | 0.68 | 0.550287 |
Target: 5'- -aGCgGCCaUCGCGuCCCGuGcGGCCGg -3' miRNA: 3'- uaCGgCGGgAGCGCuGGGCuC-CUGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 57778 | 0.68 | 0.549364 |
Target: 5'- -gGCCGCCUuacgaggggccguUCGUGACggGAGGACCc -3' miRNA: 3'- uaCGGCGGG-------------AGCGCUGggCUCCUGGc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 149379 | 0.68 | 0.541075 |
Target: 5'- uAUGuuGC--UCGCGACCgccggccauauCGAGGACCGg -3' miRNA: 3'- -UACggCGggAGCGCUGG-----------GCUCCUGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 191318 | 0.68 | 0.541075 |
Target: 5'- cUGCCGCCUUCGCGuAUCUGAuGuCCa -3' miRNA: 3'- uACGGCGGGAGCGC-UGGGCUcCuGGc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 128047 | 0.68 | 0.522811 |
Target: 5'- -cGaCGUCCUCGuCGGCCCuGAGGACg- -3' miRNA: 3'- uaCgGCGGGAGC-GCUGGG-CUCCUGgc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 30755 | 0.68 | 0.526445 |
Target: 5'- -gGCUGCCCUCG-GaAUCCGAGGucggcggacgcggacGCCGa -3' miRNA: 3'- uaCGGCGGGAGCgC-UGGGCUCC---------------UGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 123702 | 0.68 | 0.522811 |
Target: 5'- -gGCCGCCCUuguccgucuUGCG-CCCGAaggucaGGAUCGa -3' miRNA: 3'- uaCGGCGGGA---------GCGCuGGGCU------CCUGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 114985 | 0.68 | 0.541075 |
Target: 5'- uUGCCcucgGCCCUgGCGGCCgCGcGGAUCu -3' miRNA: 3'- uACGG----CGGGAgCGCUGG-GCuCCUGGc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 80982 | 0.68 | 0.550287 |
Target: 5'- -cGCCGCCgUCGuCGcccgcuCCCGAGGucagcCCGa -3' miRNA: 3'- uaCGGCGGgAGC-GCu-----GGGCUCCu----GGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 137499 | 0.68 | 0.531915 |
Target: 5'- -cGcCCGCCCguaCGCGcGCgCGAGGcACCGg -3' miRNA: 3'- uaC-GGCGGGa--GCGC-UGgGCUCC-UGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 133903 | 0.68 | 0.56885 |
Target: 5'- -gGCCaCCCUCGCGgagcgaccGCCuCGAaGGACUGa -3' miRNA: 3'- uaCGGcGGGAGCGC--------UGG-GCU-CCUGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 90425 | 0.68 | 0.541075 |
Target: 5'- cGUGUCGCCgCUCGUGACCCcggucgaguaGAuGGACa- -3' miRNA: 3'- -UACGGCGG-GAGCGCUGGG----------CU-CCUGgc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 76405 | 0.68 | 0.541075 |
Target: 5'- -cGCCGUCCgaguggCGCcGCCCGAGccGACCc -3' miRNA: 3'- uaCGGCGGGa-----GCGcUGGGCUC--CUGGc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 91500 | 0.68 | 0.522811 |
Target: 5'- -cGCCGUgauCCUCGaCGACgUCGAGGAUCu -3' miRNA: 3'- uaCGGCG---GGAGC-GCUG-GGCUCCUGGc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 64155 | 0.69 | 0.487041 |
Target: 5'- -gGCCucGCCUUCGgGACCgUGAGaGACCGu -3' miRNA: 3'- uaCGG--CGGGAGCgCUGG-GCUC-CUGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 184493 | 0.69 | 0.512867 |
Target: 5'- -cGCCGCCgC-CGCGGCgCCGGGuggcguaGACCGu -3' miRNA: 3'- uaCGGCGG-GaGCGCUG-GGCUC-------CUGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 38568 | 0.69 | 0.513768 |
Target: 5'- gGUGCCGCaCCUCgGCG--UCGAGGACUc -3' miRNA: 3'- -UACGGCG-GGAG-CGCugGGCUCCUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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