miRNA display CGI

Results 81 - 87 of 87 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
16215	3'	-63.8	NC_004065.1	+	102819	0.72	0.329177
	Target:  5'- -gGCCGCCgCUCcCGAaccacgucCCCGAGGGCCc -3' miRNA:   3'- uaCGGCGG-GAGcGCU--------GGGCUCCUGGc -5'
16215	3'	-63.8	NC_004065.1	+	61855	0.73	0.302493
	Target:  5'- -cGCCGCUgUCGCGcCCCGcgcgaAGGGCCu -3' miRNA:   3'- uaCGGCGGgAGCGCuGGGC-----UCCUGGc -5'
16215	3'	-63.8	NC_004065.1	+	38489	0.73	0.289789
	Target:  5'- -aGCCGCCCUUGCuggacgugGACCUcGGGAUCGa -3' miRNA:   3'- uaCGGCGGGAGCG--------CUGGGcUCCUGGC- -5'
16215	3'	-63.8	NC_004065.1	+	97634	0.74	0.243153
	Target:  5'- -aGCCGCCCUUGCGGCaCgGAGacGCCGg -3' miRNA:   3'- uaCGGCGGGAGCGCUG-GgCUCc-UGGC- -5'
16215	3'	-63.8	NC_004065.1	+	169578	0.76	0.18083
	Target:  5'- uUGCCGCUgUCGCGGCUccggccgguucgCGGGGGCCGu -3' miRNA:   3'- uACGGCGGgAGCGCUGG------------GCUCCUGGC- -5'
16215	3'	-63.8	NC_004065.1	+	447	0.85	0.046074
	Target:  5'- -aGCCGCCCUCGCGGCguaacguCCGGGGACCc -3' miRNA:   3'- uaCGGCGGGAGCGCUG-------GGCUCCUGGc -5'
16215	3'	-63.8	NC_004065.1	+	203148	1.05	0.001716
	Target:  5'- cAUGCCGCCCUCGCGACCCGAGGACCGu -3' miRNA:   3'- -UACGGCGGGAGCGCUGGGCUCCUGGC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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