miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16215 3' -63.8 NC_004065.1 + 81192 0.69 0.478278
Target:  5'- -gGCCG-CCUCGUGGCCgagCGAGGGCa- -3'
miRNA:   3'- uaCGGCgGGAGCGCUGG---GCUCCUGgc -5'
16215 3' -63.8 NC_004065.1 + 127643 0.69 0.487041
Target:  5'- -cGCUGCCgCU-GCGGCgCCGAGGGCgGc -3'
miRNA:   3'- uaCGGCGG-GAgCGCUG-GGCUCCUGgC- -5'
16215 3' -63.8 NC_004065.1 + 110763 0.69 0.494106
Target:  5'- -cGCCGCCUgacauauaggcgCGCGGCCCGuuucGGAgCGc -3'
miRNA:   3'- uaCGGCGGGa-----------GCGCUGGGCu---CCUgGC- -5'
16215 3' -63.8 NC_004065.1 + 122260 0.69 0.494992
Target:  5'- cUGCUGCCCgCGCcgacaccGACCUGGGGcauccGCCGg -3'
miRNA:   3'- uACGGCGGGaGCG-------CUGGGCUCC-----UGGC- -5'
16215 3' -63.8 NC_004065.1 + 88588 0.69 0.511068
Target:  5'- gAUGUCGCCCucgUCGCGGCCCuccaugagcucggcGAuGGCCGc -3'
miRNA:   3'- -UACGGCGGG---AGCGCUGGG--------------CUcCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 4866 0.69 0.50479
Target:  5'- -cGCCGCCCUCGgcuCGgucACCCagGAGGAgCGu -3'
miRNA:   3'- uaCGGCGGGAGC---GC---UGGG--CUCCUgGC- -5'
16215 3' -63.8 NC_004065.1 + 147355 0.69 0.478278
Target:  5'- -gGCCGaCCCUgCGCaccagagguugGugCCGGGGACCc -3'
miRNA:   3'- uaCGGC-GGGA-GCG-----------CugGGCUCCUGGc -5'
16215 3' -63.8 NC_004065.1 + 64155 0.69 0.487041
Target:  5'- -gGCCucGCCUUCGgGACCgUGAGaGACCGu -3'
miRNA:   3'- uaCGG--CGGGAGCgCUGG-GCUC-CUGGC- -5'
16215 3' -63.8 NC_004065.1 + 184493 0.69 0.512867
Target:  5'- -cGCCGCCgC-CGCGGCgCCGGGuggcguaGACCGu -3'
miRNA:   3'- uaCGGCGG-GaGCGCUG-GGCUC-------CUGGC- -5'
16215 3' -63.8 NC_004065.1 + 38568 0.69 0.513768
Target:  5'- gGUGCCGCaCCUCgGCG--UCGAGGACUc -3'
miRNA:   3'- -UACGGCG-GGAG-CGCugGGCUCCUGGc -5'
16215 3' -63.8 NC_004065.1 + 114985 0.68 0.541075
Target:  5'- uUGCCcucgGCCCUgGCGGCCgCGcGGAUCu -3'
miRNA:   3'- uACGG----CGGGAgCGCUGG-GCuCCUGGc -5'
16215 3' -63.8 NC_004065.1 + 90425 0.68 0.541075
Target:  5'- cGUGUCGCCgCUCGUGACCCcggucgaguaGAuGGACa- -3'
miRNA:   3'- -UACGGCGG-GAGCGCUGGG----------CU-CCUGgc -5'
16215 3' -63.8 NC_004065.1 + 128047 0.68 0.522811
Target:  5'- -cGaCGUCCUCGuCGGCCCuGAGGACg- -3'
miRNA:   3'- uaCgGCGGGAGC-GCUGGG-CUCCUGgc -5'
16215 3' -63.8 NC_004065.1 + 123702 0.68 0.522811
Target:  5'- -gGCCGCCCUuguccgucuUGCG-CCCGAaggucaGGAUCGa -3'
miRNA:   3'- uaCGGCGGGA---------GCGCuGGGCU------CCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 91500 0.68 0.522811
Target:  5'- -cGCCGUgauCCUCGaCGACgUCGAGGAUCu -3'
miRNA:   3'- uaCGGCG---GGAGC-GCUG-GGCUCCUGGc -5'
16215 3' -63.8 NC_004065.1 + 76405 0.68 0.541075
Target:  5'- -cGCCGUCCgaguggCGCcGCCCGAGccGACCc -3'
miRNA:   3'- uaCGGCGGGa-----GCGcUGGGCUC--CUGGc -5'
16215 3' -63.8 NC_004065.1 + 30755 0.68 0.526445
Target:  5'- -gGCUGCCCUCG-GaAUCCGAGGucggcggacgcggacGCCGa -3'
miRNA:   3'- uaCGGCGGGAGCgC-UGGGCUCC---------------UGGC- -5'
16215 3' -63.8 NC_004065.1 + 133903 0.68 0.56885
Target:  5'- -gGCCaCCCUCGCGgagcgaccGCCuCGAaGGACUGa -3'
miRNA:   3'- uaCGGcGGGAGCGC--------UGG-GCU-CCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 191318 0.68 0.541075
Target:  5'- cUGCCGCCUUCGCGuAUCUGAuGuCCa -3'
miRNA:   3'- uACGGCGGGAGCGC-UGGGCUcCuGGc -5'
16215 3' -63.8 NC_004065.1 + 137499 0.68 0.531915
Target:  5'- -cGcCCGCCCguaCGCGcGCgCGAGGcACCGg -3'
miRNA:   3'- uaC-GGCGGGa--GCGC-UGgGCUCC-UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.