miRNA display CGI


Results 61 - 80 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16215 3' -63.8 NC_004065.1 + 223425 0.67 0.60639
Target:  5'- --aUCGCCUUCccacgugugugGCGACCCGAGGcCCc -3'
miRNA:   3'- uacGGCGGGAG-----------CGCUGGGCUCCuGGc -5'
16215 3' -63.8 NC_004065.1 + 73742 0.67 0.60639
Target:  5'- cUGCCGCCgCUacuccCGCcuCCCGAGG-CCGc -3'
miRNA:   3'- uACGGCGG-GA-----GCGcuGGGCUCCuGGC- -5'
16215 3' -63.8 NC_004065.1 + 100041 0.67 0.61583
Target:  5'- -cGCCGCCCcCGCGGCguuCUGcGGACaCGc -3'
miRNA:   3'- uaCGGCGGGaGCGCUG---GGCuCCUG-GC- -5'
16215 3' -63.8 NC_004065.1 + 74633 0.67 0.596967
Target:  5'- -cGCCGCCaC-CGCuACCCGGgucugagguccGGACCGc -3'
miRNA:   3'- uaCGGCGG-GaGCGcUGGGCU-----------CCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 144287 0.67 0.596967
Target:  5'- gAUGCCGauguugauguCCCUCGCGuaGCUCGAGGcguucagcGCCu -3'
miRNA:   3'- -UACGGC----------GGGAGCGC--UGGGCUCC--------UGGc -5'
16215 3' -63.8 NC_004065.1 + 68395 0.67 0.603561
Target:  5'- -cGCCGCgUUCGUGGcgcagcaccccaucCCCGGGGAgCGc -3'
miRNA:   3'- uaCGGCGgGAGCGCU--------------GGGCUCCUgGC- -5'
16215 3' -63.8 NC_004065.1 + 70996 0.66 0.644189
Target:  5'- -gGUCGCC---GCGACCCGAGGucuCUGg -3'
miRNA:   3'- uaCGGCGGgagCGCUGGGCUCCu--GGC- -5'
16215 3' -63.8 NC_004065.1 + 73121 0.66 0.647968
Target:  5'- gGUGCCGgcggaggaucgggacCCCgacgCGCGACCCcAGGAUuCGg -3'
miRNA:   3'- -UACGGC---------------GGGa---GCGCUGGGcUCCUG-GC- -5'
16215 3' -63.8 NC_004065.1 + 114615 0.66 0.653633
Target:  5'- --aUCGCCCUCGCuacGACCCcgccGGGGACg- -3'
miRNA:   3'- uacGGCGGGAGCG---CUGGG----CUCCUGgc -5'
16215 3' -63.8 NC_004065.1 + 127722 0.66 0.652689
Target:  5'- -gGCUGCUCUCGCucUCCGAGuggacgugcgccuGACCGa -3'
miRNA:   3'- uaCGGCGGGAGCGcuGGGCUC-------------CUGGC- -5'
16215 3' -63.8 NC_004065.1 + 188977 0.66 0.644189
Target:  5'- -cGUCGCCg-CGCGGCCCGAGcuCUGc -3'
miRNA:   3'- uaCGGCGGgaGCGCUGGGCUCcuGGC- -5'
16215 3' -63.8 NC_004065.1 + 72087 0.66 0.653633
Target:  5'- -cGCCaCCCUgCGCGGCCUGAucGCCa -3'
miRNA:   3'- uaCGGcGGGA-GCGCUGGGCUccUGGc -5'
16215 3' -63.8 NC_004065.1 + 85672 0.66 0.653633
Target:  5'- -cGCCGUCgacaUCGCGuaccaGCUCGAGGAgCGa -3'
miRNA:   3'- uaCGGCGGg---AGCGC-----UGGGCUCCUgGC- -5'
16215 3' -63.8 NC_004065.1 + 201125 0.66 0.663064
Target:  5'- gAUGuCCGCCUUgucCGcCGACUCGGGGcGCCa -3'
miRNA:   3'- -UAC-GGCGGGA---GC-GCUGGGCUCC-UGGc -5'
16215 3' -63.8 NC_004065.1 + 202735 0.66 0.663064
Target:  5'- -gGCCGUUucggCUCGUGuCCCGAGcGCCGu -3'
miRNA:   3'- uaCGGCGG----GAGCGCuGGGCUCcUGGC- -5'
16215 3' -63.8 NC_004065.1 + 77995 0.66 0.672473
Target:  5'- -aGCCGCCC-CGgGA-CgGAGGAgCCGu -3'
miRNA:   3'- uaCGGCGGGaGCgCUgGgCUCCU-GGC- -5'
16215 3' -63.8 NC_004065.1 + 116140 0.66 0.681854
Target:  5'- -cGgCGUCCUgCgGCGGCUCG-GGGCCGg -3'
miRNA:   3'- uaCgGCGGGA-G-CGCUGGGCuCCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 18555 0.66 0.6912
Target:  5'- -cGCCGacgaCCUCuccgGCGACuccuCCGAGGAgCGg -3'
miRNA:   3'- uaCGGCg---GGAG----CGCUG----GGCUCCUgGC- -5'
16215 3' -63.8 NC_004065.1 + 163269 0.66 0.6912
Target:  5'- -cGCCGgcgccUCCUCGCGAUuCCGGuacGGAUCGa -3'
miRNA:   3'- uaCGGC-----GGGAGCGCUG-GGCU---CCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 100194 0.66 0.653633
Target:  5'- cUGCagGUCCUCGCGcaGCuuGAGGuCCa -3'
miRNA:   3'- uACGg-CGGGAGCGC--UGggCUCCuGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.