miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16215 3' -63.8 NC_004065.1 + 203148 1.05 0.001716
Target:  5'- cAUGCCGCCCUCGCGACCCGAGGACCGu -3'
miRNA:   3'- -UACGGCGGGAGCGCUGGGCUCCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 447 0.85 0.046074
Target:  5'- -aGCCGCCCUCGCGGCguaacguCCGGGGACCc -3'
miRNA:   3'- uaCGGCGGGAGCGCUG-------GGCUCCUGGc -5'
16215 3' -63.8 NC_004065.1 + 169578 0.76 0.18083
Target:  5'- uUGCCGCUgUCGCGGCUccggccgguucgCGGGGGCCGu -3'
miRNA:   3'- uACGGCGGgAGCGCUGG------------GCUCCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 97634 0.74 0.243153
Target:  5'- -aGCCGCCCUUGCGGCaCgGAGacGCCGg -3'
miRNA:   3'- uaCGGCGGGAGCGCUG-GgCUCc-UGGC- -5'
16215 3' -63.8 NC_004065.1 + 38489 0.73 0.289789
Target:  5'- -aGCCGCCCUUGCuggacgugGACCUcGGGAUCGa -3'
miRNA:   3'- uaCGGCGGGAGCG--------CUGGGcUCCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 61855 0.73 0.302493
Target:  5'- -cGCCGCUgUCGCGcCCCGcgcgaAGGGCCu -3'
miRNA:   3'- uaCGGCGGgAGCGCuGGGC-----UCCUGGc -5'
16215 3' -63.8 NC_004065.1 + 102819 0.72 0.329177
Target:  5'- -gGCCGCCgCUCcCGAaccacgucCCCGAGGGCCc -3'
miRNA:   3'- uaCGGCGG-GAGcGCU--------GGGCUCCUGGc -5'
16215 3' -63.8 NC_004065.1 + 30826 0.72 0.334022
Target:  5'- gGUGCgCGUCCUCGCGACCCucgacgaagccgacGAcGACCa -3'
miRNA:   3'- -UACG-GCGGGAGCGCUGGG--------------CUcCUGGc -5'
16215 3' -63.8 NC_004065.1 + 75752 0.71 0.387613
Target:  5'- -gGCUGCCCcagCGCuGACCCGGGGGaggCGg -3'
miRNA:   3'- uaCGGCGGGa--GCG-CUGGGCUCCUg--GC- -5'
16215 3' -63.8 NC_004065.1 + 148822 0.71 0.395382
Target:  5'- uUGCCcaacauGCCCUCGCucGGCCaCGAGGcgGCCGc -3'
miRNA:   3'- uACGG------CGGGAGCG--CUGG-GCUCC--UGGC- -5'
16215 3' -63.8 NC_004065.1 + 35245 0.71 0.411218
Target:  5'- --aUCGCCCUgCGCGACCCGgucucGGGACgGc -3'
miRNA:   3'- uacGGCGGGA-GCGCUGGGC-----UCCUGgC- -5'
16215 3' -63.8 NC_004065.1 + 93028 0.71 0.413628
Target:  5'- -cGUCGCCCUCGCuguuccuGGCgCCGAGGuagucagauaucgugGCCGg -3'
miRNA:   3'- uaCGGCGGGAGCG-------CUG-GGCUCC---------------UGGC- -5'
16215 3' -63.8 NC_004065.1 + 112883 0.7 0.418472
Target:  5'- gGUGCCGUucaccguCCUgaGCGAuCCCGAGGACUu -3'
miRNA:   3'- -UACGGCG-------GGAg-CGCU-GGGCUCCUGGc -5'
16215 3' -63.8 NC_004065.1 + 109927 0.7 0.419282
Target:  5'- -gGCCGCCgUCGCGuCCCGGGaGGUCa -3'
miRNA:   3'- uaCGGCGGgAGCGCuGGGCUC-CUGGc -5'
16215 3' -63.8 NC_004065.1 + 106046 0.7 0.427442
Target:  5'- -cGCCGa--UCGUGACCaagGAGGACCGg -3'
miRNA:   3'- uaCGGCgggAGCGCUGGg--CUCCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 29012 0.7 0.435694
Target:  5'- -cGCCGCgCgcaCGCGGCCuCGAGucaGACCGg -3'
miRNA:   3'- uaCGGCGgGa--GCGCUGG-GCUC---CUGGC- -5'
16215 3' -63.8 NC_004065.1 + 184914 0.7 0.444038
Target:  5'- -aGUCGCCUUCGCcgccGCUgGAGGACCc -3'
miRNA:   3'- uaCGGCGGGAGCGc---UGGgCUCCUGGc -5'
16215 3' -63.8 NC_004065.1 + 66402 0.7 0.444038
Target:  5'- -cGCCGCCgCUCGauccggagcuACCCGAGGuCCGc -3'
miRNA:   3'- uaCGGCGG-GAGCgc--------UGGGCUCCuGGC- -5'
16215 3' -63.8 NC_004065.1 + 154114 0.7 0.452471
Target:  5'- -cGUCGCCUUCG-GACCCGAuaacGaGGCCGa -3'
miRNA:   3'- uaCGGCGGGAGCgCUGGGCU----C-CUGGC- -5'
16215 3' -63.8 NC_004065.1 + 81192 0.69 0.478278
Target:  5'- -gGCCG-CCUCGUGGCCgagCGAGGGCa- -3'
miRNA:   3'- uaCGGCgGGAGCGCUGG---GCUCCUGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.