miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16215 3' -63.8 NC_004065.1 + 57778 0.68 0.549364
Target:  5'- -gGCCGCCUuacgaggggccguUCGUGACggGAGGACCc -3'
miRNA:   3'- uaCGGCGGG-------------AGCGCUGggCUCCUGGc -5'
16215 3' -63.8 NC_004065.1 + 184178 0.68 0.550287
Target:  5'- -aGCgGCCaUCGCGuCCCGuGcGGCCGg -3'
miRNA:   3'- uaCGgCGGgAGCGCuGGGCuC-CUGGC- -5'
16215 3' -63.8 NC_004065.1 + 80982 0.68 0.550287
Target:  5'- -cGCCGCCgUCGuCGcccgcuCCCGAGGucagcCCGa -3'
miRNA:   3'- uaCGGCGGgAGC-GCu-----GGGCUCCu----GGC- -5'
16215 3' -63.8 NC_004065.1 + 133903 0.68 0.56885
Target:  5'- -gGCCaCCCUCGCGgagcgaccGCCuCGAaGGACUGa -3'
miRNA:   3'- uaCGGcGGGAGCGC--------UGG-GCU-CCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 205513 0.67 0.587565
Target:  5'- -cGCCGCCauCUUGgGGCCgGcgcucAGGGCCGg -3'
miRNA:   3'- uaCGGCGG--GAGCgCUGGgC-----UCCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 94675 0.67 0.587565
Target:  5'- -cGCCGCgucuggccuugaUCUCGCGGCCCcugaccuugGAGGGCgGc -3'
miRNA:   3'- uaCGGCG------------GGAGCGCUGGG---------CUCCUGgC- -5'
16215 3' -63.8 NC_004065.1 + 187167 0.67 0.596026
Target:  5'- cGUGgCGuCCCUCGCGcucUCCGAGGggucucgACCGa -3'
miRNA:   3'- -UACgGC-GGGAGCGCu--GGGCUCC-------UGGC- -5'
16215 3' -63.8 NC_004065.1 + 63517 0.67 0.596967
Target:  5'- -gGCCucGCCCUCGCGGCCguaGAucGCCGc -3'
miRNA:   3'- uaCGG--CGGGAGCGCUGGg--CUccUGGC- -5'
16215 3' -63.8 NC_004065.1 + 32191 0.67 0.596967
Target:  5'- cUGCCGCCCcUGgGACCUGGacGACCc -3'
miRNA:   3'- uACGGCGGGaGCgCUGGGCUc-CUGGc -5'
16215 3' -63.8 NC_004065.1 + 144287 0.67 0.596967
Target:  5'- gAUGCCGauguugauguCCCUCGCGuaGCUCGAGGcguucagcGCCu -3'
miRNA:   3'- -UACGGC----------GGGAGCGC--UGGGCUCC--------UGGc -5'
16215 3' -63.8 NC_004065.1 + 74633 0.67 0.596967
Target:  5'- -cGCCGCCaC-CGCuACCCGGgucugagguccGGACCGc -3'
miRNA:   3'- uaCGGCGG-GaGCGcUGGGCU-----------CCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 68395 0.67 0.603561
Target:  5'- -cGCCGCgUUCGUGGcgcagcaccccaucCCCGGGGAgCGc -3'
miRNA:   3'- uaCGGCGgGAGCGCU--------------GGGCUCCUgGC- -5'
16215 3' -63.8 NC_004065.1 + 223425 0.67 0.60639
Target:  5'- --aUCGCCUUCccacgugugugGCGACCCGAGGcCCc -3'
miRNA:   3'- uacGGCGGGAG-----------CGCUGGGCUCCuGGc -5'
16215 3' -63.8 NC_004065.1 + 110719 0.67 0.60639
Target:  5'- -aGCCGCCaCcCuCGACCCGAaGACCu -3'
miRNA:   3'- uaCGGCGG-GaGcGCUGGGCUcCUGGc -5'
16215 3' -63.8 NC_004065.1 + 73742 0.67 0.60639
Target:  5'- cUGCCGCCgCUacuccCGCcuCCCGAGG-CCGc -3'
miRNA:   3'- uACGGCGG-GA-----GCGcuGGGCUCCuGGC- -5'
16215 3' -63.8 NC_004065.1 + 179094 0.67 0.60639
Target:  5'- -cGCCGCCCauguuUCGCGuGCCCGuGaACCc -3'
miRNA:   3'- uaCGGCGGG-----AGCGC-UGGGCuCcUGGc -5'
16215 3' -63.8 NC_004065.1 + 76022 0.67 0.61583
Target:  5'- gAUGUCGgCCaaCGUGACCaCGAGGGCUu -3'
miRNA:   3'- -UACGGCgGGa-GCGCUGG-GCUCCUGGc -5'
16215 3' -63.8 NC_004065.1 + 162164 0.67 0.61583
Target:  5'- -cGUCaGCCCUCGgagGAUCgGAGGAUCGg -3'
miRNA:   3'- uaCGG-CGGGAGCg--CUGGgCUCCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 109831 0.67 0.61583
Target:  5'- -cGCCGUCCUgcUGCGG-CgGGGGGCCa -3'
miRNA:   3'- uaCGGCGGGA--GCGCUgGgCUCCUGGc -5'
16215 3' -63.8 NC_004065.1 + 26672 0.67 0.61583
Target:  5'- cGUGUCGCCC--GUGACCCuuuuugauGAGGACgGa -3'
miRNA:   3'- -UACGGCGGGagCGCUGGG--------CUCCUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.