Results 81 - 87 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16215 | 3' | -63.8 | NC_004065.1 | + | 200329 | 0.66 | 0.681854 |
Target: 5'- -cGCCGCUCgaccggCGaUGACaagaaCGAGGACCu -3' miRNA: 3'- uaCGGCGGGa-----GC-GCUGg----GCUCCUGGc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 116140 | 0.66 | 0.681854 |
Target: 5'- -cGgCGUCCUgCgGCGGCUCG-GGGCCGg -3' miRNA: 3'- uaCgGCGGGA-G-CGCUGGGCuCCUGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 87586 | 0.66 | 0.6912 |
Target: 5'- --aUCGCCUUCaUGACCCuGAGGAgCCGg -3' miRNA: 3'- uacGGCGGGAGcGCUGGG-CUCCU-GGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 155195 | 0.66 | 0.6912 |
Target: 5'- -cGCCGCCUcggUCcCGACCCGGGcGucuCCa -3' miRNA: 3'- uaCGGCGGG---AGcGCUGGGCUC-Cu--GGc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 163269 | 0.66 | 0.6912 |
Target: 5'- -cGCCGgcgccUCCUCGCGAUuCCGGuacGGAUCGa -3' miRNA: 3'- uaCGGC-----GGGAGCGCUG-GGCU---CCUGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 18555 | 0.66 | 0.6912 |
Target: 5'- -cGCCGacgaCCUCuccgGCGACuccuCCGAGGAgCGg -3' miRNA: 3'- uaCGGCg---GGAG----CGCUG----GGCUCCUgGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 110707 | 0.65 | 0.699576 |
Target: 5'- -aGCCGCCgC-CGCGACUCGGccgaguauuuuauGGAUUGg -3' miRNA: 3'- uaCGGCGG-GaGCGCUGGGCU-------------CCUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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