Results 21 - 40 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16215 | 3' | -63.8 | NC_004065.1 | + | 70996 | 0.66 | 0.644189 |
Target: 5'- -gGUCGCC---GCGACCCGAGGucuCUGg -3' miRNA: 3'- uaCGGCGGgagCGCUGGGCUCCu--GGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 58141 | 0.67 | 0.634736 |
Target: 5'- cUGCCGCCCUgucgUGCGACUCugaugauacuauGAcGGCCGa -3' miRNA: 3'- uACGGCGGGA----GCGCUGGG------------CUcCUGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 182714 | 0.67 | 0.63379 |
Target: 5'- -cGCCGCggaucggCCUCacggGCGACgCCGGGGccACCGa -3' miRNA: 3'- uaCGGCG-------GGAG----CGCUG-GGCUCC--UGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 37678 | 0.67 | 0.62528 |
Target: 5'- ---aCGCCCUCGUGACa-GAGGAgcCCGu -3' miRNA: 3'- uacgGCGGGAGCGCUGggCUCCU--GGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 200893 | 0.67 | 0.62528 |
Target: 5'- -gGCUGCCCgUCGCG--CUGGGcGACCGg -3' miRNA: 3'- uaCGGCGGG-AGCGCugGGCUC-CUGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 29691 | 0.67 | 0.61583 |
Target: 5'- uUGCUGagCCUCgGCGcCCCGAcGGGCUGg -3' miRNA: 3'- uACGGCg-GGAG-CGCuGGGCU-CCUGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 100041 | 0.67 | 0.61583 |
Target: 5'- -cGCCGCCCcCGCGGCguuCUGcGGACaCGc -3' miRNA: 3'- uaCGGCGGGaGCGCUG---GGCuCCUG-GC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 162164 | 0.67 | 0.61583 |
Target: 5'- -cGUCaGCCCUCGgagGAUCgGAGGAUCGg -3' miRNA: 3'- uaCGG-CGGGAGCg--CUGGgCUCCUGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 109831 | 0.67 | 0.61583 |
Target: 5'- -cGCCGUCCUgcUGCGG-CgGGGGGCCa -3' miRNA: 3'- uaCGGCGGGA--GCGCUgGgCUCCUGGc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 26672 | 0.67 | 0.61583 |
Target: 5'- cGUGUCGCCC--GUGACCCuuuuugauGAGGACgGa -3' miRNA: 3'- -UACGGCGGGagCGCUGGG--------CUCCUGgC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 76022 | 0.67 | 0.61583 |
Target: 5'- gAUGUCGgCCaaCGUGACCaCGAGGGCUu -3' miRNA: 3'- -UACGGCgGGa-GCGCUGG-GCUCCUGGc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 110719 | 0.67 | 0.60639 |
Target: 5'- -aGCCGCCaCcCuCGACCCGAaGACCu -3' miRNA: 3'- uaCGGCGG-GaGcGCUGGGCUcCUGGc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 223425 | 0.67 | 0.60639 |
Target: 5'- --aUCGCCUUCccacgugugugGCGACCCGAGGcCCc -3' miRNA: 3'- uacGGCGGGAG-----------CGCUGGGCUCCuGGc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 179094 | 0.67 | 0.60639 |
Target: 5'- -cGCCGCCCauguuUCGCGuGCCCGuGaACCc -3' miRNA: 3'- uaCGGCGGG-----AGCGC-UGGGCuCcUGGc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 73742 | 0.67 | 0.60639 |
Target: 5'- cUGCCGCCgCUacuccCGCcuCCCGAGG-CCGc -3' miRNA: 3'- uACGGCGG-GA-----GCGcuGGGCUCCuGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 68395 | 0.67 | 0.603561 |
Target: 5'- -cGCCGCgUUCGUGGcgcagcaccccaucCCCGGGGAgCGc -3' miRNA: 3'- uaCGGCGgGAGCGCU--------------GGGCUCCUgGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 63517 | 0.67 | 0.596967 |
Target: 5'- -gGCCucGCCCUCGCGGCCguaGAucGCCGc -3' miRNA: 3'- uaCGG--CGGGAGCGCUGGg--CUccUGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 74633 | 0.67 | 0.596967 |
Target: 5'- -cGCCGCCaC-CGCuACCCGGgucugagguccGGACCGc -3' miRNA: 3'- uaCGGCGG-GaGCGcUGGGCU-----------CCUGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 144287 | 0.67 | 0.596967 |
Target: 5'- gAUGCCGauguugauguCCCUCGCGuaGCUCGAGGcguucagcGCCu -3' miRNA: 3'- -UACGGC----------GGGAGCGC--UGGGCUCC--------UGGc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 32191 | 0.67 | 0.596967 |
Target: 5'- cUGCCGCCCcUGgGACCUGGacGACCc -3' miRNA: 3'- uACGGCGGGaGCgCUGGGCUc-CUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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