miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16215 3' -63.8 NC_004065.1 + 70996 0.66 0.644189
Target:  5'- -gGUCGCC---GCGACCCGAGGucuCUGg -3'
miRNA:   3'- uaCGGCGGgagCGCUGGGCUCCu--GGC- -5'
16215 3' -63.8 NC_004065.1 + 72087 0.66 0.653633
Target:  5'- -cGCCaCCCUgCGCGGCCUGAucGCCa -3'
miRNA:   3'- uaCGGcGGGA-GCGCUGGGCUccUGGc -5'
16215 3' -63.8 NC_004065.1 + 73121 0.66 0.647968
Target:  5'- gGUGCCGgcggaggaucgggacCCCgacgCGCGACCCcAGGAUuCGg -3'
miRNA:   3'- -UACGGC---------------GGGa---GCGCUGGGcUCCUG-GC- -5'
16215 3' -63.8 NC_004065.1 + 73742 0.67 0.60639
Target:  5'- cUGCCGCCgCUacuccCGCcuCCCGAGG-CCGc -3'
miRNA:   3'- uACGGCGG-GA-----GCGcuGGGCUCCuGGC- -5'
16215 3' -63.8 NC_004065.1 + 74633 0.67 0.596967
Target:  5'- -cGCCGCCaC-CGCuACCCGGgucugagguccGGACCGc -3'
miRNA:   3'- uaCGGCGG-GaGCGcUGGGCU-----------CCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 75752 0.71 0.387613
Target:  5'- -gGCUGCCCcagCGCuGACCCGGGGGaggCGg -3'
miRNA:   3'- uaCGGCGGGa--GCG-CUGGGCUCCUg--GC- -5'
16215 3' -63.8 NC_004065.1 + 76022 0.67 0.61583
Target:  5'- gAUGUCGgCCaaCGUGACCaCGAGGGCUu -3'
miRNA:   3'- -UACGGCgGGa-GCGCUGG-GCUCCUGGc -5'
16215 3' -63.8 NC_004065.1 + 76405 0.68 0.541075
Target:  5'- -cGCCGUCCgaguggCGCcGCCCGAGccGACCc -3'
miRNA:   3'- uaCGGCGGGa-----GCGcUGGGCUC--CUGGc -5'
16215 3' -63.8 NC_004065.1 + 77995 0.66 0.672473
Target:  5'- -aGCCGCCC-CGgGA-CgGAGGAgCCGu -3'
miRNA:   3'- uaCGGCGGGaGCgCUgGgCUCCU-GGC- -5'
16215 3' -63.8 NC_004065.1 + 80982 0.68 0.550287
Target:  5'- -cGCCGCCgUCGuCGcccgcuCCCGAGGucagcCCGa -3'
miRNA:   3'- uaCGGCGGgAGC-GCu-----GGGCUCCu----GGC- -5'
16215 3' -63.8 NC_004065.1 + 81192 0.69 0.478278
Target:  5'- -gGCCG-CCUCGUGGCCgagCGAGGGCa- -3'
miRNA:   3'- uaCGGCgGGAGCGCUGG---GCUCCUGgc -5'
16215 3' -63.8 NC_004065.1 + 85672 0.66 0.653633
Target:  5'- -cGCCGUCgacaUCGCGuaccaGCUCGAGGAgCGa -3'
miRNA:   3'- uaCGGCGGg---AGCGC-----UGGGCUCCUgGC- -5'
16215 3' -63.8 NC_004065.1 + 87586 0.66 0.6912
Target:  5'- --aUCGCCUUCaUGACCCuGAGGAgCCGg -3'
miRNA:   3'- uacGGCGGGAGcGCUGGG-CUCCU-GGC- -5'
16215 3' -63.8 NC_004065.1 + 88588 0.69 0.511068
Target:  5'- gAUGUCGCCCucgUCGCGGCCCuccaugagcucggcGAuGGCCGc -3'
miRNA:   3'- -UACGGCGGG---AGCGCUGGG--------------CUcCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 90425 0.68 0.541075
Target:  5'- cGUGUCGCCgCUCGUGACCCcggucgaguaGAuGGACa- -3'
miRNA:   3'- -UACGGCGG-GAGCGCUGGG----------CU-CCUGgc -5'
16215 3' -63.8 NC_004065.1 + 91500 0.68 0.522811
Target:  5'- -cGCCGUgauCCUCGaCGACgUCGAGGAUCu -3'
miRNA:   3'- uaCGGCG---GGAGC-GCUG-GGCUCCUGGc -5'
16215 3' -63.8 NC_004065.1 + 93028 0.71 0.413628
Target:  5'- -cGUCGCCCUCGCuguuccuGGCgCCGAGGuagucagauaucgugGCCGg -3'
miRNA:   3'- uaCGGCGGGAGCG-------CUG-GGCUCC---------------UGGC- -5'
16215 3' -63.8 NC_004065.1 + 94675 0.67 0.587565
Target:  5'- -cGCCGCgucuggccuugaUCUCGCGGCCCcugaccuugGAGGGCgGc -3'
miRNA:   3'- uaCGGCG------------GGAGCGCUGGG---------CUCCUGgC- -5'
16215 3' -63.8 NC_004065.1 + 97634 0.74 0.243153
Target:  5'- -aGCCGCCCUUGCGGCaCgGAGacGCCGg -3'
miRNA:   3'- uaCGGCGGGAGCGCUG-GgCUCc-UGGC- -5'
16215 3' -63.8 NC_004065.1 + 100041 0.67 0.61583
Target:  5'- -cGCCGCCCcCGCGGCguuCUGcGGACaCGc -3'
miRNA:   3'- uaCGGCGGGaGCGCUG---GGCuCCUG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.