miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16215 3' -63.8 NC_004065.1 + 100194 0.66 0.653633
Target:  5'- cUGCagGUCCUCGCGcaGCuuGAGGuCCa -3'
miRNA:   3'- uACGg-CGGGAGCGC--UGggCUCCuGGc -5'
16215 3' -63.8 NC_004065.1 + 102819 0.72 0.329177
Target:  5'- -gGCCGCCgCUCcCGAaccacgucCCCGAGGGCCc -3'
miRNA:   3'- uaCGGCGG-GAGcGCU--------GGGCUCCUGGc -5'
16215 3' -63.8 NC_004065.1 + 106046 0.7 0.427442
Target:  5'- -cGCCGa--UCGUGACCaagGAGGACCGg -3'
miRNA:   3'- uaCGGCgggAGCGCUGGg--CUCCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 109831 0.67 0.61583
Target:  5'- -cGCCGUCCUgcUGCGG-CgGGGGGCCa -3'
miRNA:   3'- uaCGGCGGGA--GCGCUgGgCUCCUGGc -5'
16215 3' -63.8 NC_004065.1 + 109927 0.7 0.419282
Target:  5'- -gGCCGCCgUCGCGuCCCGGGaGGUCa -3'
miRNA:   3'- uaCGGCGGgAGCGCuGGGCUC-CUGGc -5'
16215 3' -63.8 NC_004065.1 + 110707 0.65 0.699576
Target:  5'- -aGCCGCCgC-CGCGACUCGGccgaguauuuuauGGAUUGg -3'
miRNA:   3'- uaCGGCGG-GaGCGCUGGGCU-------------CCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 110719 0.67 0.60639
Target:  5'- -aGCCGCCaCcCuCGACCCGAaGACCu -3'
miRNA:   3'- uaCGGCGG-GaGcGCUGGGCUcCUGGc -5'
16215 3' -63.8 NC_004065.1 + 110763 0.69 0.494106
Target:  5'- -cGCCGCCUgacauauaggcgCGCGGCCCGuuucGGAgCGc -3'
miRNA:   3'- uaCGGCGGGa-----------GCGCUGGGCu---CCUgGC- -5'
16215 3' -63.8 NC_004065.1 + 112883 0.7 0.418472
Target:  5'- gGUGCCGUucaccguCCUgaGCGAuCCCGAGGACUu -3'
miRNA:   3'- -UACGGCG-------GGAg-CGCU-GGGCUCCUGGc -5'
16215 3' -63.8 NC_004065.1 + 114615 0.66 0.653633
Target:  5'- --aUCGCCCUCGCuacGACCCcgccGGGGACg- -3'
miRNA:   3'- uacGGCGGGAGCG---CUGGG----CUCCUGgc -5'
16215 3' -63.8 NC_004065.1 + 114985 0.68 0.541075
Target:  5'- uUGCCcucgGCCCUgGCGGCCgCGcGGAUCu -3'
miRNA:   3'- uACGG----CGGGAgCGCUGG-GCuCCUGGc -5'
16215 3' -63.8 NC_004065.1 + 116140 0.66 0.681854
Target:  5'- -cGgCGUCCUgCgGCGGCUCG-GGGCCGg -3'
miRNA:   3'- uaCgGCGGGA-G-CGCUGGGCuCCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 122260 0.69 0.494992
Target:  5'- cUGCUGCCCgCGCcgacaccGACCUGGGGcauccGCCGg -3'
miRNA:   3'- uACGGCGGGaGCG-------CUGGGCUCC-----UGGC- -5'
16215 3' -63.8 NC_004065.1 + 123702 0.68 0.522811
Target:  5'- -gGCCGCCCUuguccgucuUGCG-CCCGAaggucaGGAUCGa -3'
miRNA:   3'- uaCGGCGGGA---------GCGCuGGGCU------CCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 127643 0.69 0.487041
Target:  5'- -cGCUGCCgCU-GCGGCgCCGAGGGCgGc -3'
miRNA:   3'- uaCGGCGG-GAgCGCUG-GGCUCCUGgC- -5'
16215 3' -63.8 NC_004065.1 + 127722 0.66 0.652689
Target:  5'- -gGCUGCUCUCGCucUCCGAGuggacgugcgccuGACCGa -3'
miRNA:   3'- uaCGGCGGGAGCGcuGGGCUC-------------CUGGC- -5'
16215 3' -63.8 NC_004065.1 + 128047 0.68 0.522811
Target:  5'- -cGaCGUCCUCGuCGGCCCuGAGGACg- -3'
miRNA:   3'- uaCgGCGGGAGC-GCUGGG-CUCCUGgc -5'
16215 3' -63.8 NC_004065.1 + 133903 0.68 0.56885
Target:  5'- -gGCCaCCCUCGCGgagcgaccGCCuCGAaGGACUGa -3'
miRNA:   3'- uaCGGcGGGAGCGC--------UGG-GCU-CCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 137499 0.68 0.531915
Target:  5'- -cGcCCGCCCguaCGCGcGCgCGAGGcACCGg -3'
miRNA:   3'- uaC-GGCGGGa--GCGC-UGgGCUCC-UGGC- -5'
16215 3' -63.8 NC_004065.1 + 144287 0.67 0.596967
Target:  5'- gAUGCCGauguugauguCCCUCGCGuaGCUCGAGGcguucagcGCCu -3'
miRNA:   3'- -UACGGC----------GGGAGCGC--UGGGCUCC--------UGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.