miRNA display CGI


Results 61 - 80 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16215 3' -63.8 NC_004065.1 + 147355 0.69 0.478278
Target:  5'- -gGCCGaCCCUgCGCaccagagguugGugCCGGGGACCc -3'
miRNA:   3'- uaCGGC-GGGA-GCG-----------CugGGCUCCUGGc -5'
16215 3' -63.8 NC_004065.1 + 148822 0.71 0.395382
Target:  5'- uUGCCcaacauGCCCUCGCucGGCCaCGAGGcgGCCGc -3'
miRNA:   3'- uACGG------CGGGAGCG--CUGG-GCUCC--UGGC- -5'
16215 3' -63.8 NC_004065.1 + 149379 0.68 0.541075
Target:  5'- uAUGuuGC--UCGCGACCgccggccauauCGAGGACCGg -3'
miRNA:   3'- -UACggCGggAGCGCUGG-----------GCUCCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 154114 0.7 0.452471
Target:  5'- -cGUCGCCUUCG-GACCCGAuaacGaGGCCGa -3'
miRNA:   3'- uaCGGCGGGAGCgCUGGGCU----C-CUGGC- -5'
16215 3' -63.8 NC_004065.1 + 155195 0.66 0.6912
Target:  5'- -cGCCGCCUcggUCcCGACCCGGGcGucuCCa -3'
miRNA:   3'- uaCGGCGGG---AGcGCUGGGCUC-Cu--GGc -5'
16215 3' -63.8 NC_004065.1 + 162164 0.67 0.61583
Target:  5'- -cGUCaGCCCUCGgagGAUCgGAGGAUCGg -3'
miRNA:   3'- uaCGG-CGGGAGCg--CUGGgCUCCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 163011 0.69 0.487041
Target:  5'- -gGCUGCCCgcgCGgGGCCCGuacacGGGcGCCGa -3'
miRNA:   3'- uaCGGCGGGa--GCgCUGGGC-----UCC-UGGC- -5'
16215 3' -63.8 NC_004065.1 + 163269 0.66 0.6912
Target:  5'- -cGCCGgcgccUCCUCGCGAUuCCGGuacGGAUCGa -3'
miRNA:   3'- uaCGGC-----GGGAGCGCUG-GGCU---CCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 169578 0.76 0.18083
Target:  5'- uUGCCGCUgUCGCGGCUccggccgguucgCGGGGGCCGu -3'
miRNA:   3'- uACGGCGGgAGCGCUGG------------GCUCCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 179094 0.67 0.60639
Target:  5'- -cGCCGCCCauguuUCGCGuGCCCGuGaACCc -3'
miRNA:   3'- uaCGGCGGG-----AGCGC-UGGGCuCcUGGc -5'
16215 3' -63.8 NC_004065.1 + 182714 0.67 0.63379
Target:  5'- -cGCCGCggaucggCCUCacggGCGACgCCGGGGccACCGa -3'
miRNA:   3'- uaCGGCG-------GGAG----CGCUG-GGCUCC--UGGC- -5'
16215 3' -63.8 NC_004065.1 + 184178 0.68 0.550287
Target:  5'- -aGCgGCCaUCGCGuCCCGuGcGGCCGg -3'
miRNA:   3'- uaCGgCGGgAGCGCuGGGCuC-CUGGC- -5'
16215 3' -63.8 NC_004065.1 + 184493 0.69 0.512867
Target:  5'- -cGCCGCCgC-CGCGGCgCCGGGuggcguaGACCGu -3'
miRNA:   3'- uaCGGCGG-GaGCGCUG-GGCUC-------CUGGC- -5'
16215 3' -63.8 NC_004065.1 + 184914 0.7 0.444038
Target:  5'- -aGUCGCCUUCGCcgccGCUgGAGGACCc -3'
miRNA:   3'- uaCGGCGGGAGCGc---UGGgCUCCUGGc -5'
16215 3' -63.8 NC_004065.1 + 187167 0.67 0.596026
Target:  5'- cGUGgCGuCCCUCGCGcucUCCGAGGggucucgACCGa -3'
miRNA:   3'- -UACgGC-GGGAGCGCu--GGGCUCC-------UGGC- -5'
16215 3' -63.8 NC_004065.1 + 188977 0.66 0.644189
Target:  5'- -cGUCGCCg-CGCGGCCCGAGcuCUGc -3'
miRNA:   3'- uaCGGCGGgaGCGCUGGGCUCcuGGC- -5'
16215 3' -63.8 NC_004065.1 + 191318 0.68 0.541075
Target:  5'- cUGCCGCCUUCGCGuAUCUGAuGuCCa -3'
miRNA:   3'- uACGGCGGGAGCGC-UGGGCUcCuGGc -5'
16215 3' -63.8 NC_004065.1 + 200329 0.66 0.681854
Target:  5'- -cGCCGCUCgaccggCGaUGACaagaaCGAGGACCu -3'
miRNA:   3'- uaCGGCGGGa-----GC-GCUGg----GCUCCUGGc -5'
16215 3' -63.8 NC_004065.1 + 200893 0.67 0.62528
Target:  5'- -gGCUGCCCgUCGCG--CUGGGcGACCGg -3'
miRNA:   3'- uaCGGCGGG-AGCGCugGGCUC-CUGGC- -5'
16215 3' -63.8 NC_004065.1 + 201125 0.66 0.663064
Target:  5'- gAUGuCCGCCUUgucCGcCGACUCGGGGcGCCa -3'
miRNA:   3'- -UAC-GGCGGGA---GC-GCUGGGCUCC-UGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.