Results 21 - 40 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16215 | 3' | -63.8 | NC_004065.1 | + | 163011 | 0.69 | 0.487041 |
Target: 5'- -gGCUGCCCgcgCGgGGCCCGuacacGGGcGCCGa -3' miRNA: 3'- uaCGGCGGGa--GCgCUGGGC-----UCC-UGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 162164 | 0.67 | 0.61583 |
Target: 5'- -cGUCaGCCCUCGgagGAUCgGAGGAUCGg -3' miRNA: 3'- uaCGG-CGGGAGCg--CUGGgCUCCUGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 155195 | 0.66 | 0.6912 |
Target: 5'- -cGCCGCCUcggUCcCGACCCGGGcGucuCCa -3' miRNA: 3'- uaCGGCGGG---AGcGCUGGGCUC-Cu--GGc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 154114 | 0.7 | 0.452471 |
Target: 5'- -cGUCGCCUUCG-GACCCGAuaacGaGGCCGa -3' miRNA: 3'- uaCGGCGGGAGCgCUGGGCU----C-CUGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 149379 | 0.68 | 0.541075 |
Target: 5'- uAUGuuGC--UCGCGACCgccggccauauCGAGGACCGg -3' miRNA: 3'- -UACggCGggAGCGCUGG-----------GCUCCUGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 148822 | 0.71 | 0.395382 |
Target: 5'- uUGCCcaacauGCCCUCGCucGGCCaCGAGGcgGCCGc -3' miRNA: 3'- uACGG------CGGGAGCG--CUGG-GCUCC--UGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 147355 | 0.69 | 0.478278 |
Target: 5'- -gGCCGaCCCUgCGCaccagagguugGugCCGGGGACCc -3' miRNA: 3'- uaCGGC-GGGA-GCG-----------CugGGCUCCUGGc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 144287 | 0.67 | 0.596967 |
Target: 5'- gAUGCCGauguugauguCCCUCGCGuaGCUCGAGGcguucagcGCCu -3' miRNA: 3'- -UACGGC----------GGGAGCGC--UGGGCUCC--------UGGc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 137499 | 0.68 | 0.531915 |
Target: 5'- -cGcCCGCCCguaCGCGcGCgCGAGGcACCGg -3' miRNA: 3'- uaC-GGCGGGa--GCGC-UGgGCUCC-UGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 133903 | 0.68 | 0.56885 |
Target: 5'- -gGCCaCCCUCGCGgagcgaccGCCuCGAaGGACUGa -3' miRNA: 3'- uaCGGcGGGAGCGC--------UGG-GCU-CCUGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 128047 | 0.68 | 0.522811 |
Target: 5'- -cGaCGUCCUCGuCGGCCCuGAGGACg- -3' miRNA: 3'- uaCgGCGGGAGC-GCUGGG-CUCCUGgc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 127722 | 0.66 | 0.652689 |
Target: 5'- -gGCUGCUCUCGCucUCCGAGuggacgugcgccuGACCGa -3' miRNA: 3'- uaCGGCGGGAGCGcuGGGCUC-------------CUGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 127643 | 0.69 | 0.487041 |
Target: 5'- -cGCUGCCgCU-GCGGCgCCGAGGGCgGc -3' miRNA: 3'- uaCGGCGG-GAgCGCUG-GGCUCCUGgC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 123702 | 0.68 | 0.522811 |
Target: 5'- -gGCCGCCCUuguccgucuUGCG-CCCGAaggucaGGAUCGa -3' miRNA: 3'- uaCGGCGGGA---------GCGCuGGGCU------CCUGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 122260 | 0.69 | 0.494992 |
Target: 5'- cUGCUGCCCgCGCcgacaccGACCUGGGGcauccGCCGg -3' miRNA: 3'- uACGGCGGGaGCG-------CUGGGCUCC-----UGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 116140 | 0.66 | 0.681854 |
Target: 5'- -cGgCGUCCUgCgGCGGCUCG-GGGCCGg -3' miRNA: 3'- uaCgGCGGGA-G-CGCUGGGCuCCUGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 114985 | 0.68 | 0.541075 |
Target: 5'- uUGCCcucgGCCCUgGCGGCCgCGcGGAUCu -3' miRNA: 3'- uACGG----CGGGAgCGCUGG-GCuCCUGGc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 114615 | 0.66 | 0.653633 |
Target: 5'- --aUCGCCCUCGCuacGACCCcgccGGGGACg- -3' miRNA: 3'- uacGGCGGGAGCG---CUGGG----CUCCUGgc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 112883 | 0.7 | 0.418472 |
Target: 5'- gGUGCCGUucaccguCCUgaGCGAuCCCGAGGACUu -3' miRNA: 3'- -UACGGCG-------GGAg-CGCU-GGGCUCCUGGc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 110763 | 0.69 | 0.494106 |
Target: 5'- -cGCCGCCUgacauauaggcgCGCGGCCCGuuucGGAgCGc -3' miRNA: 3'- uaCGGCGGGa-----------GCGCUGGGCu---CCUgGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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