Results 41 - 60 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16215 | 3' | -63.8 | NC_004065.1 | + | 110719 | 0.67 | 0.60639 |
Target: 5'- -aGCCGCCaCcCuCGACCCGAaGACCu -3' miRNA: 3'- uaCGGCGG-GaGcGCUGGGCUcCUGGc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 110707 | 0.65 | 0.699576 |
Target: 5'- -aGCCGCCgC-CGCGACUCGGccgaguauuuuauGGAUUGg -3' miRNA: 3'- uaCGGCGG-GaGCGCUGGGCU-------------CCUGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 109927 | 0.7 | 0.419282 |
Target: 5'- -gGCCGCCgUCGCGuCCCGGGaGGUCa -3' miRNA: 3'- uaCGGCGGgAGCGCuGGGCUC-CUGGc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 109831 | 0.67 | 0.61583 |
Target: 5'- -cGCCGUCCUgcUGCGG-CgGGGGGCCa -3' miRNA: 3'- uaCGGCGGGA--GCGCUgGgCUCCUGGc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 106046 | 0.7 | 0.427442 |
Target: 5'- -cGCCGa--UCGUGACCaagGAGGACCGg -3' miRNA: 3'- uaCGGCgggAGCGCUGGg--CUCCUGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 102819 | 0.72 | 0.329177 |
Target: 5'- -gGCCGCCgCUCcCGAaccacgucCCCGAGGGCCc -3' miRNA: 3'- uaCGGCGG-GAGcGCU--------GGGCUCCUGGc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 100194 | 0.66 | 0.653633 |
Target: 5'- cUGCagGUCCUCGCGcaGCuuGAGGuCCa -3' miRNA: 3'- uACGg-CGGGAGCGC--UGggCUCCuGGc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 100041 | 0.67 | 0.61583 |
Target: 5'- -cGCCGCCCcCGCGGCguuCUGcGGACaCGc -3' miRNA: 3'- uaCGGCGGGaGCGCUG---GGCuCCUG-GC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 97634 | 0.74 | 0.243153 |
Target: 5'- -aGCCGCCCUUGCGGCaCgGAGacGCCGg -3' miRNA: 3'- uaCGGCGGGAGCGCUG-GgCUCc-UGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 94675 | 0.67 | 0.587565 |
Target: 5'- -cGCCGCgucuggccuugaUCUCGCGGCCCcugaccuugGAGGGCgGc -3' miRNA: 3'- uaCGGCG------------GGAGCGCUGGG---------CUCCUGgC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 93028 | 0.71 | 0.413628 |
Target: 5'- -cGUCGCCCUCGCuguuccuGGCgCCGAGGuagucagauaucgugGCCGg -3' miRNA: 3'- uaCGGCGGGAGCG-------CUG-GGCUCC---------------UGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 91500 | 0.68 | 0.522811 |
Target: 5'- -cGCCGUgauCCUCGaCGACgUCGAGGAUCu -3' miRNA: 3'- uaCGGCG---GGAGC-GCUG-GGCUCCUGGc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 90425 | 0.68 | 0.541075 |
Target: 5'- cGUGUCGCCgCUCGUGACCCcggucgaguaGAuGGACa- -3' miRNA: 3'- -UACGGCGG-GAGCGCUGGG----------CU-CCUGgc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 88588 | 0.69 | 0.511068 |
Target: 5'- gAUGUCGCCCucgUCGCGGCCCuccaugagcucggcGAuGGCCGc -3' miRNA: 3'- -UACGGCGGG---AGCGCUGGG--------------CUcCUGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 87586 | 0.66 | 0.6912 |
Target: 5'- --aUCGCCUUCaUGACCCuGAGGAgCCGg -3' miRNA: 3'- uacGGCGGGAGcGCUGGG-CUCCU-GGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 85672 | 0.66 | 0.653633 |
Target: 5'- -cGCCGUCgacaUCGCGuaccaGCUCGAGGAgCGa -3' miRNA: 3'- uaCGGCGGg---AGCGC-----UGGGCUCCUgGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 81192 | 0.69 | 0.478278 |
Target: 5'- -gGCCG-CCUCGUGGCCgagCGAGGGCa- -3' miRNA: 3'- uaCGGCgGGAGCGCUGG---GCUCCUGgc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 80982 | 0.68 | 0.550287 |
Target: 5'- -cGCCGCCgUCGuCGcccgcuCCCGAGGucagcCCGa -3' miRNA: 3'- uaCGGCGGgAGC-GCu-----GGGCUCCu----GGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 77995 | 0.66 | 0.672473 |
Target: 5'- -aGCCGCCC-CGgGA-CgGAGGAgCCGu -3' miRNA: 3'- uaCGGCGGGaGCgCUgGgCUCCU-GGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 76405 | 0.68 | 0.541075 |
Target: 5'- -cGCCGUCCgaguggCGCcGCCCGAGccGACCc -3' miRNA: 3'- uaCGGCGGGa-----GCGcUGGGCUC--CUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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