miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16215 3' -63.8 NC_004065.1 + 68395 0.67 0.603561
Target:  5'- -cGCCGCgUUCGUGGcgcagcaccccaucCCCGGGGAgCGc -3'
miRNA:   3'- uaCGGCGgGAGCGCU--------------GGGCUCCUgGC- -5'
16215 3' -63.8 NC_004065.1 + 123702 0.68 0.522811
Target:  5'- -gGCCGCCCUuguccgucuUGCG-CCCGAaggucaGGAUCGa -3'
miRNA:   3'- uaCGGCGGGA---------GCGCuGGGCU------CCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 91500 0.68 0.522811
Target:  5'- -cGCCGUgauCCUCGaCGACgUCGAGGAUCu -3'
miRNA:   3'- uaCGGCG---GGAGC-GCUG-GGCUCCUGGc -5'
16215 3' -63.8 NC_004065.1 + 76405 0.68 0.541075
Target:  5'- -cGCCGUCCgaguggCGCcGCCCGAGccGACCc -3'
miRNA:   3'- uaCGGCGGGa-----GCGcUGGGCUC--CUGGc -5'
16215 3' -63.8 NC_004065.1 + 90425 0.68 0.541075
Target:  5'- cGUGUCGCCgCUCGUGACCCcggucgaguaGAuGGACa- -3'
miRNA:   3'- -UACGGCGG-GAGCGCUGGG----------CU-CCUGgc -5'
16215 3' -63.8 NC_004065.1 + 133903 0.68 0.56885
Target:  5'- -gGCCaCCCUCGCGgagcgaccGCCuCGAaGGACUGa -3'
miRNA:   3'- uaCGGcGGGAGCGC--------UGG-GCU-CCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 63517 0.67 0.596967
Target:  5'- -gGCCucGCCCUCGCGGCCguaGAucGCCGc -3'
miRNA:   3'- uaCGG--CGGGAGCGCUGGg--CUccUGGC- -5'
16215 3' -63.8 NC_004065.1 + 74633 0.67 0.596967
Target:  5'- -cGCCGCCaC-CGCuACCCGGgucugagguccGGACCGc -3'
miRNA:   3'- uaCGGCGG-GaGCGcUGGGCU-----------CCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 144287 0.67 0.596967
Target:  5'- gAUGCCGauguugauguCCCUCGCGuaGCUCGAGGcguucagcGCCu -3'
miRNA:   3'- -UACGGC----------GGGAGCGC--UGGGCUCC--------UGGc -5'
16215 3' -63.8 NC_004065.1 + 88588 0.69 0.511068
Target:  5'- gAUGUCGCCCucgUCGCGGCCCuccaugagcucggcGAuGGCCGc -3'
miRNA:   3'- -UACGGCGGG---AGCGCUGGG--------------CUcCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 122260 0.69 0.494992
Target:  5'- cUGCUGCCCgCGCcgacaccGACCUGGGGcauccGCCGg -3'
miRNA:   3'- uACGGCGGGaGCG-------CUGGGCUCC-----UGGC- -5'
16215 3' -63.8 NC_004065.1 + 110763 0.69 0.494106
Target:  5'- -cGCCGCCUgacauauaggcgCGCGGCCCGuuucGGAgCGc -3'
miRNA:   3'- uaCGGCGGGa-----------GCGCUGGGCu---CCUgGC- -5'
16215 3' -63.8 NC_004065.1 + 169578 0.76 0.18083
Target:  5'- uUGCCGCUgUCGCGGCUccggccgguucgCGGGGGCCGu -3'
miRNA:   3'- uACGGCGGgAGCGCUGG------------GCUCCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 97634 0.74 0.243153
Target:  5'- -aGCCGCCCUUGCGGCaCgGAGacGCCGg -3'
miRNA:   3'- uaCGGCGGGAGCGCUG-GgCUCc-UGGC- -5'
16215 3' -63.8 NC_004065.1 + 61855 0.73 0.302493
Target:  5'- -cGCCGCUgUCGCGcCCCGcgcgaAGGGCCu -3'
miRNA:   3'- uaCGGCGGgAGCGCuGGGC-----UCCUGGc -5'
16215 3' -63.8 NC_004065.1 + 30826 0.72 0.334022
Target:  5'- gGUGCgCGUCCUCGCGACCCucgacgaagccgacGAcGACCa -3'
miRNA:   3'- -UACG-GCGGGAGCGCUGGG--------------CUcCUGGc -5'
16215 3' -63.8 NC_004065.1 + 75752 0.71 0.387613
Target:  5'- -gGCUGCCCcagCGCuGACCCGGGGGaggCGg -3'
miRNA:   3'- uaCGGCGGGa--GCG-CUGGGCUCCUg--GC- -5'
16215 3' -63.8 NC_004065.1 + 109927 0.7 0.419282
Target:  5'- -gGCCGCCgUCGCGuCCCGGGaGGUCa -3'
miRNA:   3'- uaCGGCGGgAGCGCuGGGCUC-CUGGc -5'
16215 3' -63.8 NC_004065.1 + 81192 0.69 0.478278
Target:  5'- -gGCCG-CCUCGUGGCCgagCGAGGGCa- -3'
miRNA:   3'- uaCGGCgGGAGCGCUGG---GCUCCUGgc -5'
16215 3' -63.8 NC_004065.1 + 127643 0.69 0.487041
Target:  5'- -cGCUGCCgCU-GCGGCgCCGAGGGCgGc -3'
miRNA:   3'- uaCGGCGG-GAgCGCUG-GGCUCCUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.