Results 81 - 87 of 87 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 16215 | 3' | -63.8 | NC_004065.1 | + | 128047 | 0.68 | 0.522811 |
|
Target: 5'- -cGaCGUCCUCGuCGGCCCuGAGGACg- -3' miRNA: 3'- uaCgGCGGGAGC-GCUGGG-CUCCUGgc -5' |
|||||||
| 16215 | 3' | -63.8 | NC_004065.1 | + | 38568 | 0.69 | 0.513768 |
|
Target: 5'- gGUGCCGCaCCUCgGCG--UCGAGGACUc -3' miRNA: 3'- -UACGGCG-GGAG-CGCugGGCUCCUGGc -5' |
|||||||
| 16215 | 3' | -63.8 | NC_004065.1 | + | 184493 | 0.69 | 0.512867 |
|
Target: 5'- -cGCCGCCgC-CGCGGCgCCGGGuggcguaGACCGu -3' miRNA: 3'- uaCGGCGG-GaGCGCUG-GGCUC-------CUGGC- -5' |
|||||||
| 16215 | 3' | -63.8 | NC_004065.1 | + | 4866 | 0.69 | 0.50479 |
|
Target: 5'- -cGCCGCCCUCGgcuCGgucACCCagGAGGAgCGu -3' miRNA: 3'- uaCGGCGGGAGC---GC---UGGG--CUCCUgGC- -5' |
|||||||
| 16215 | 3' | -63.8 | NC_004065.1 | + | 64155 | 0.69 | 0.487041 |
|
Target: 5'- -gGCCucGCCUUCGgGACCgUGAGaGACCGu -3' miRNA: 3'- uaCGG--CGGGAGCgCUGG-GCUC-CUGGC- -5' |
|||||||
| 16215 | 3' | -63.8 | NC_004065.1 | + | 163011 | 0.69 | 0.487041 |
|
Target: 5'- -gGCUGCCCgcgCGgGGCCCGuacacGGGcGCCGa -3' miRNA: 3'- uaCGGCGGGa--GCgCUGGGC-----UCC-UGGC- -5' |
|||||||
| 16215 | 3' | -63.8 | NC_004065.1 | + | 447 | 0.85 | 0.046074 |
|
Target: 5'- -aGCCGCCCUCGCGGCguaacguCCGGGGACCc -3' miRNA: 3'- uaCGGCGGGAGCGCUG-------GGCUCCUGGc -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home