miRNA display CGI


Results 1 - 20 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16215 3' -63.8 NC_004065.1 + 447 0.85 0.046074
Target:  5'- -aGCCGCCCUCGCGGCguaacguCCGGGGACCc -3'
miRNA:   3'- uaCGGCGGGAGCGCUG-------GGCUCCUGGc -5'
16215 3' -63.8 NC_004065.1 + 38568 0.69 0.513768
Target:  5'- gGUGCCGCaCCUCgGCG--UCGAGGACUc -3'
miRNA:   3'- -UACGGCG-GGAG-CGCugGGCUCCUGGc -5'
16215 3' -63.8 NC_004065.1 + 30755 0.68 0.526445
Target:  5'- -gGCUGCCCUCG-GaAUCCGAGGucggcggacgcggacGCCGa -3'
miRNA:   3'- uaCGGCGGGAGCgC-UGGGCUCC---------------UGGC- -5'
16215 3' -63.8 NC_004065.1 + 163269 0.66 0.6912
Target:  5'- -cGCCGgcgccUCCUCGCGAUuCCGGuacGGAUCGa -3'
miRNA:   3'- uaCGGC-----GGGAGCGCUG-GGCU---CCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 35245 0.71 0.411218
Target:  5'- --aUCGCCCUgCGCGACCCGgucucGGGACgGc -3'
miRNA:   3'- uacGGCGGGA-GCGCUGGGC-----UCCUGgC- -5'
16215 3' -63.8 NC_004065.1 + 93028 0.71 0.413628
Target:  5'- -cGUCGCCCUCGCuguuccuGGCgCCGAGGuagucagauaucgugGCCGg -3'
miRNA:   3'- uaCGGCGGGAGCG-------CUG-GGCUCC---------------UGGC- -5'
16215 3' -63.8 NC_004065.1 + 106046 0.7 0.427442
Target:  5'- -cGCCGa--UCGUGACCaagGAGGACCGg -3'
miRNA:   3'- uaCGGCgggAGCGCUGGg--CUCCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 29012 0.7 0.435694
Target:  5'- -cGCCGCgCgcaCGCGGCCuCGAGucaGACCGg -3'
miRNA:   3'- uaCGGCGgGa--GCGCUGG-GCUC---CUGGC- -5'
16215 3' -63.8 NC_004065.1 + 154114 0.7 0.452471
Target:  5'- -cGUCGCCUUCG-GACCCGAuaacGaGGCCGa -3'
miRNA:   3'- uaCGGCGGGAGCgCUGGGCU----C-CUGGC- -5'
16215 3' -63.8 NC_004065.1 + 184493 0.69 0.512867
Target:  5'- -cGCCGCCgC-CGCGGCgCCGGGuggcguaGACCGu -3'
miRNA:   3'- uaCGGCGG-GaGCGCUG-GGCUC-------CUGGC- -5'
16215 3' -63.8 NC_004065.1 + 163011 0.69 0.487041
Target:  5'- -gGCUGCCCgcgCGgGGCCCGuacacGGGcGCCGa -3'
miRNA:   3'- uaCGGCGGGa--GCgCUGGGC-----UCC-UGGC- -5'
16215 3' -63.8 NC_004065.1 + 66402 0.7 0.444038
Target:  5'- -cGCCGCCgCUCGauccggagcuACCCGAGGuCCGc -3'
miRNA:   3'- uaCGGCGG-GAGCgc--------UGGGCUCCuGGC- -5'
16215 3' -63.8 NC_004065.1 + 38489 0.73 0.289789
Target:  5'- -aGCCGCCCUUGCuggacgugGACCUcGGGAUCGa -3'
miRNA:   3'- uaCGGCGGGAGCG--------CUGGGcUCCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 64155 0.69 0.487041
Target:  5'- -gGCCucGCCUUCGgGACCgUGAGaGACCGu -3'
miRNA:   3'- uaCGG--CGGGAGCgCUGG-GCUC-CUGGC- -5'
16215 3' -63.8 NC_004065.1 + 102819 0.72 0.329177
Target:  5'- -gGCCGCCgCUCcCGAaccacgucCCCGAGGGCCc -3'
miRNA:   3'- uaCGGCGG-GAGcGCU--------GGGCUCCUGGc -5'
16215 3' -63.8 NC_004065.1 + 184914 0.7 0.444038
Target:  5'- -aGUCGCCUUCGCcgccGCUgGAGGACCc -3'
miRNA:   3'- uaCGGCGGGAGCGc---UGGgCUCCUGGc -5'
16215 3' -63.8 NC_004065.1 + 4866 0.69 0.50479
Target:  5'- -cGCCGCCCUCGgcuCGgucACCCagGAGGAgCGu -3'
miRNA:   3'- uaCGGCGGGAGC---GC---UGGG--CUCCUgGC- -5'
16215 3' -63.8 NC_004065.1 + 128047 0.68 0.522811
Target:  5'- -cGaCGUCCUCGuCGGCCCuGAGGACg- -3'
miRNA:   3'- uaCgGCGGGAGC-GCUGGG-CUCCUGgc -5'
16215 3' -63.8 NC_004065.1 + 148822 0.71 0.395382
Target:  5'- uUGCCcaacauGCCCUCGCucGGCCaCGAGGcgGCCGc -3'
miRNA:   3'- uACGG------CGGGAGCG--CUGG-GCUCC--UGGC- -5'
16215 3' -63.8 NC_004065.1 + 112883 0.7 0.418472
Target:  5'- gGUGCCGUucaccguCCUgaGCGAuCCCGAGGACUu -3'
miRNA:   3'- -UACGGCG-------GGAg-CGCU-GGGCUCCUGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.