miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16215 3' -63.8 NC_004065.1 + 114985 0.68 0.541075
Target:  5'- uUGCCcucgGCCCUgGCGGCCgCGcGGAUCu -3'
miRNA:   3'- uACGG----CGGGAgCGCUGG-GCuCCUGGc -5'
16215 3' -63.8 NC_004065.1 + 137499 0.68 0.531915
Target:  5'- -cGcCCGCCCguaCGCGcGCgCGAGGcACCGg -3'
miRNA:   3'- uaC-GGCGGGa--GCGC-UGgGCUCC-UGGC- -5'
16215 3' -63.8 NC_004065.1 + 154114 0.7 0.452471
Target:  5'- -cGUCGCCUUCG-GACCCGAuaacGaGGCCGa -3'
miRNA:   3'- uaCGGCGGGAGCgCUGGGCU----C-CUGGC- -5'
16215 3' -63.8 NC_004065.1 + 35245 0.71 0.411218
Target:  5'- --aUCGCCCUgCGCGACCCGgucucGGGACgGc -3'
miRNA:   3'- uacGGCGGGA-GCGCUGGGC-----UCCUGgC- -5'
16215 3' -63.8 NC_004065.1 + 200893 0.67 0.62528
Target:  5'- -gGCUGCCCgUCGCG--CUGGGcGACCGg -3'
miRNA:   3'- uaCGGCGGG-AGCGCugGGCUC-CUGGC- -5'
16215 3' -63.8 NC_004065.1 + 205513 0.67 0.587565
Target:  5'- -cGCCGCCauCUUGgGGCCgGcgcucAGGGCCGg -3'
miRNA:   3'- uaCGGCGG--GAGCgCUGGgC-----UCCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 128047 0.68 0.522811
Target:  5'- -cGaCGUCCUCGuCGGCCCuGAGGACg- -3'
miRNA:   3'- uaCgGCGGGAGC-GCUGGG-CUCCUGgc -5'
16215 3' -63.8 NC_004065.1 + 148822 0.71 0.395382
Target:  5'- uUGCCcaacauGCCCUCGCucGGCCaCGAGGcgGCCGc -3'
miRNA:   3'- uACGG------CGGGAGCG--CUGG-GCUCC--UGGC- -5'
16215 3' -63.8 NC_004065.1 + 80982 0.68 0.550287
Target:  5'- -cGCCGCCgUCGuCGcccgcuCCCGAGGucagcCCGa -3'
miRNA:   3'- uaCGGCGGgAGC-GCu-----GGGCUCCu----GGC- -5'
16215 3' -63.8 NC_004065.1 + 102819 0.72 0.329177
Target:  5'- -gGCCGCCgCUCcCGAaccacgucCCCGAGGGCCc -3'
miRNA:   3'- uaCGGCGG-GAGcGCU--------GGGCUCCUGGc -5'
16215 3' -63.8 NC_004065.1 + 30755 0.68 0.526445
Target:  5'- -gGCUGCCCUCG-GaAUCCGAGGucggcggacgcggacGCCGa -3'
miRNA:   3'- uaCGGCGGGAGCgC-UGGGCUCC---------------UGGC- -5'
16215 3' -63.8 NC_004065.1 + 149379 0.68 0.541075
Target:  5'- uAUGuuGC--UCGCGACCgccggccauauCGAGGACCGg -3'
miRNA:   3'- -UACggCGggAGCGCUGG-----------GCUCCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 4866 0.69 0.50479
Target:  5'- -cGCCGCCCUCGgcuCGgucACCCagGAGGAgCGu -3'
miRNA:   3'- uaCGGCGGGAGC---GC---UGGG--CUCCUgGC- -5'
16215 3' -63.8 NC_004065.1 + 147355 0.69 0.478278
Target:  5'- -gGCCGaCCCUgCGCaccagagguugGugCCGGGGACCc -3'
miRNA:   3'- uaCGGC-GGGA-GCG-----------CugGGCUCCUGGc -5'
16215 3' -63.8 NC_004065.1 + 29012 0.7 0.435694
Target:  5'- -cGCCGCgCgcaCGCGGCCuCGAGucaGACCGg -3'
miRNA:   3'- uaCGGCGgGa--GCGCUGG-GCUC---CUGGC- -5'
16215 3' -63.8 NC_004065.1 + 93028 0.71 0.413628
Target:  5'- -cGUCGCCCUCGCuguuccuGGCgCCGAGGuagucagauaucgugGCCGg -3'
miRNA:   3'- uaCGGCGGGAGCG-------CUG-GGCUCC---------------UGGC- -5'
16215 3' -63.8 NC_004065.1 + 70996 0.66 0.644189
Target:  5'- -gGUCGCC---GCGACCCGAGGucuCUGg -3'
miRNA:   3'- uaCGGCGGgagCGCUGGGCUCCu--GGC- -5'
16215 3' -63.8 NC_004065.1 + 37678 0.67 0.62528
Target:  5'- ---aCGCCCUCGUGACa-GAGGAgcCCGu -3'
miRNA:   3'- uacgGCGGGAGCGCUGggCUCCU--GGC- -5'
16215 3' -63.8 NC_004065.1 + 110719 0.67 0.60639
Target:  5'- -aGCCGCCaCcCuCGACCCGAaGACCu -3'
miRNA:   3'- uaCGGCGG-GaGcGCUGGGCUcCUGGc -5'
16215 3' -63.8 NC_004065.1 + 94675 0.67 0.587565
Target:  5'- -cGCCGCgucuggccuugaUCUCGCGGCCCcugaccuugGAGGGCgGc -3'
miRNA:   3'- uaCGGCG------------GGAGCGCUGGG---------CUCCUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.