miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16215 3' -63.8 NC_004065.1 + 114985 0.68 0.541075
Target:  5'- uUGCCcucgGCCCUgGCGGCCgCGcGGAUCu -3'
miRNA:   3'- uACGG----CGGGAgCGCUGG-GCuCCUGGc -5'
16215 3' -63.8 NC_004065.1 + 163269 0.66 0.6912
Target:  5'- -cGCCGgcgccUCCUCGCGAUuCCGGuacGGAUCGa -3'
miRNA:   3'- uaCGGC-----GGGAGCGCUG-GGCU---CCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 149379 0.68 0.541075
Target:  5'- uAUGuuGC--UCGCGACCgccggccauauCGAGGACCGg -3'
miRNA:   3'- -UACggCGggAGCGCUGG-----------GCUCCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 70996 0.66 0.644189
Target:  5'- -gGUCGCC---GCGACCCGAGGucuCUGg -3'
miRNA:   3'- uaCGGCGGgagCGCUGGGCUCCu--GGC- -5'
16215 3' -63.8 NC_004065.1 + 182714 0.67 0.63379
Target:  5'- -cGCCGCggaucggCCUCacggGCGACgCCGGGGccACCGa -3'
miRNA:   3'- uaCGGCG-------GGAG----CGCUG-GGCUCC--UGGC- -5'
16215 3' -63.8 NC_004065.1 + 87586 0.66 0.6912
Target:  5'- --aUCGCCUUCaUGACCCuGAGGAgCCGg -3'
miRNA:   3'- uacGGCGGGAGcGCUGGG-CUCCU-GGC- -5'
16215 3' -63.8 NC_004065.1 + 200329 0.66 0.681854
Target:  5'- -cGCCGCUCgaccggCGaUGACaagaaCGAGGACCu -3'
miRNA:   3'- uaCGGCGGGa-----GC-GCUGg----GCUCCUGGc -5'
16215 3' -63.8 NC_004065.1 + 75752 0.71 0.387613
Target:  5'- -gGCUGCCCcagCGCuGACCCGGGGGaggCGg -3'
miRNA:   3'- uaCGGCGGGa--GCG-CUGGGCUCCUg--GC- -5'
16215 3' -63.8 NC_004065.1 + 100194 0.66 0.653633
Target:  5'- cUGCagGUCCUCGCGcaGCuuGAGGuCCa -3'
miRNA:   3'- uACGg-CGGGAGCGC--UGggCUCCuGGc -5'
16215 3' -63.8 NC_004065.1 + 109927 0.7 0.419282
Target:  5'- -gGCCGCCgUCGCGuCCCGGGaGGUCa -3'
miRNA:   3'- uaCGGCGGgAGCGCuGGGCUC-CUGGc -5'
16215 3' -63.8 NC_004065.1 + 88588 0.69 0.511068
Target:  5'- gAUGUCGCCCucgUCGCGGCCCuccaugagcucggcGAuGGCCGc -3'
miRNA:   3'- -UACGGCGGG---AGCGCUGGG--------------CUcCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 73121 0.66 0.647968
Target:  5'- gGUGCCGgcggaggaucgggacCCCgacgCGCGACCCcAGGAUuCGg -3'
miRNA:   3'- -UACGGC---------------GGGa---GCGCUGGGcUCCUG-GC- -5'
16215 3' -63.8 NC_004065.1 + 162164 0.67 0.61583
Target:  5'- -cGUCaGCCCUCGgagGAUCgGAGGAUCGg -3'
miRNA:   3'- uaCGG-CGGGAGCg--CUGGgCUCCUGGC- -5'
16215 3' -63.8 NC_004065.1 + 109831 0.67 0.61583
Target:  5'- -cGCCGUCCUgcUGCGG-CgGGGGGCCa -3'
miRNA:   3'- uaCGGCGGGA--GCGCUgGgCUCCUGGc -5'
16215 3' -63.8 NC_004065.1 + 100041 0.67 0.61583
Target:  5'- -cGCCGCCCcCGCGGCguuCUGcGGACaCGc -3'
miRNA:   3'- uaCGGCGGGaGCGCUG---GGCuCCUG-GC- -5'
16215 3' -63.8 NC_004065.1 + 26672 0.67 0.61583
Target:  5'- cGUGUCGCCC--GUGACCCuuuuugauGAGGACgGa -3'
miRNA:   3'- -UACGGCGGGagCGCUGGG--------CUCCUGgC- -5'
16215 3' -63.8 NC_004065.1 + 76022 0.67 0.61583
Target:  5'- gAUGUCGgCCaaCGUGACCaCGAGGGCUu -3'
miRNA:   3'- -UACGGCgGGa-GCGCUGG-GCUCCUGGc -5'
16215 3' -63.8 NC_004065.1 + 76405 0.68 0.541075
Target:  5'- -cGCCGUCCgaguggCGCcGCCCGAGccGACCc -3'
miRNA:   3'- uaCGGCGGGa-----GCGcUGGGCUC--CUGGc -5'
16215 3' -63.8 NC_004065.1 + 91500 0.68 0.522811
Target:  5'- -cGCCGUgauCCUCGaCGACgUCGAGGAUCu -3'
miRNA:   3'- uaCGGCG---GGAGC-GCUG-GGCUCCUGGc -5'
16215 3' -63.8 NC_004065.1 + 123702 0.68 0.522811
Target:  5'- -gGCCGCCCUuguccgucuUGCG-CCCGAaggucaGGAUCGa -3'
miRNA:   3'- uaCGGCGGGA---------GCGCuGGGCU------CCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.