Results 61 - 80 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16215 | 3' | -63.8 | NC_004065.1 | + | 74633 | 0.67 | 0.596967 |
Target: 5'- -cGCCGCCaC-CGCuACCCGGgucugagguccGGACCGc -3' miRNA: 3'- uaCGGCGG-GaGCGcUGGGCU-----------CCUGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 144287 | 0.67 | 0.596967 |
Target: 5'- gAUGCCGauguugauguCCCUCGCGuaGCUCGAGGcguucagcGCCu -3' miRNA: 3'- -UACGGC----------GGGAGCGC--UGGGCUCC--------UGGc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 127722 | 0.66 | 0.652689 |
Target: 5'- -gGCUGCUCUCGCucUCCGAGuggacgugcgccuGACCGa -3' miRNA: 3'- uaCGGCGGGAGCGcuGGGCUC-------------CUGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 114615 | 0.66 | 0.653633 |
Target: 5'- --aUCGCCCUCGCuacGACCCcgccGGGGACg- -3' miRNA: 3'- uacGGCGGGAGCG---CUGGG----CUCCUGgc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 85672 | 0.66 | 0.653633 |
Target: 5'- -cGCCGUCgacaUCGCGuaccaGCUCGAGGAgCGa -3' miRNA: 3'- uaCGGCGGg---AGCGC-----UGGGCUCCUgGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 201125 | 0.66 | 0.663064 |
Target: 5'- gAUGuCCGCCUUgucCGcCGACUCGGGGcGCCa -3' miRNA: 3'- -UAC-GGCGGGA---GC-GCUGGGCUCC-UGGc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 202735 | 0.66 | 0.663064 |
Target: 5'- -gGCCGUUucggCUCGUGuCCCGAGcGCCGu -3' miRNA: 3'- uaCGGCGG----GAGCGCuGGGCUCcUGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 77995 | 0.66 | 0.672473 |
Target: 5'- -aGCCGCCC-CGgGA-CgGAGGAgCCGu -3' miRNA: 3'- uaCGGCGGGaGCgCUgGgCUCCU-GGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 116140 | 0.66 | 0.681854 |
Target: 5'- -cGgCGUCCUgCgGCGGCUCG-GGGCCGg -3' miRNA: 3'- uaCgGCGGGA-G-CGCUGGGCuCCUGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 18555 | 0.66 | 0.6912 |
Target: 5'- -cGCCGacgaCCUCuccgGCGACuccuCCGAGGAgCGg -3' miRNA: 3'- uaCGGCg---GGAG----CGCUG----GGCUCCUgGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 100194 | 0.66 | 0.653633 |
Target: 5'- cUGCagGUCCUCGCGcaGCuuGAGGuCCa -3' miRNA: 3'- uACGg-CGGGAGCGC--UGggCUCCuGGc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 73121 | 0.66 | 0.647968 |
Target: 5'- gGUGCCGgcggaggaucgggacCCCgacgCGCGACCCcAGGAUuCGg -3' miRNA: 3'- -UACGGC---------------GGGa---GCGCUGGGcUCCUG-GC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 68395 | 0.67 | 0.603561 |
Target: 5'- -cGCCGCgUUCGUGGcgcagcaccccaucCCCGGGGAgCGc -3' miRNA: 3'- uaCGGCGgGAGCGCU--------------GGGCUCCUgGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 73742 | 0.67 | 0.60639 |
Target: 5'- cUGCCGCCgCUacuccCGCcuCCCGAGG-CCGc -3' miRNA: 3'- uACGGCGG-GA-----GCGcuGGGCUCCuGGC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 223425 | 0.67 | 0.60639 |
Target: 5'- --aUCGCCUUCccacgugugugGCGACCCGAGGcCCc -3' miRNA: 3'- uacGGCGGGAG-----------CGCUGGGCUCCuGGc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 76022 | 0.67 | 0.61583 |
Target: 5'- gAUGUCGgCCaaCGUGACCaCGAGGGCUu -3' miRNA: 3'- -UACGGCgGGa-GCGCUGG-GCUCCUGGc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 26672 | 0.67 | 0.61583 |
Target: 5'- cGUGUCGCCC--GUGACCCuuuuugauGAGGACgGa -3' miRNA: 3'- -UACGGCGGGagCGCUGGG--------CUCCUGgC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 100041 | 0.67 | 0.61583 |
Target: 5'- -cGCCGCCCcCGCGGCguuCUGcGGACaCGc -3' miRNA: 3'- uaCGGCGGGaGCGCUG---GGCuCCUG-GC- -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 109831 | 0.67 | 0.61583 |
Target: 5'- -cGCCGUCCUgcUGCGG-CgGGGGGCCa -3' miRNA: 3'- uaCGGCGGGA--GCGCUgGgCUCCUGGc -5' |
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16215 | 3' | -63.8 | NC_004065.1 | + | 162164 | 0.67 | 0.61583 |
Target: 5'- -cGUCaGCCCUCGgagGAUCgGAGGAUCGg -3' miRNA: 3'- uaCGG-CGGGAGCg--CUGGgCUCCUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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