Results 81 - 87 of 87 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 16215 | 3' | -63.8 | NC_004065.1 | + | 76022 | 0.67 | 0.61583 |
|
Target: 5'- gAUGUCGgCCaaCGUGACCaCGAGGGCUu -3' miRNA: 3'- -UACGGCgGGa-GCGCUGG-GCUCCUGGc -5' |
|||||||
| 16215 | 3' | -63.8 | NC_004065.1 | + | 26672 | 0.67 | 0.61583 |
|
Target: 5'- cGUGUCGCCC--GUGACCCuuuuugauGAGGACgGa -3' miRNA: 3'- -UACGGCGGGagCGCUGGG--------CUCCUGgC- -5' |
|||||||
| 16215 | 3' | -63.8 | NC_004065.1 | + | 100041 | 0.67 | 0.61583 |
|
Target: 5'- -cGCCGCCCcCGCGGCguuCUGcGGACaCGc -3' miRNA: 3'- uaCGGCGGGaGCGCUG---GGCuCCUG-GC- -5' |
|||||||
| 16215 | 3' | -63.8 | NC_004065.1 | + | 109831 | 0.67 | 0.61583 |
|
Target: 5'- -cGCCGUCCUgcUGCGG-CgGGGGGCCa -3' miRNA: 3'- uaCGGCGGGA--GCGCUgGgCUCCUGGc -5' |
|||||||
| 16215 | 3' | -63.8 | NC_004065.1 | + | 162164 | 0.67 | 0.61583 |
|
Target: 5'- -cGUCaGCCCUCGgagGAUCgGAGGAUCGg -3' miRNA: 3'- uaCGG-CGGGAGCg--CUGGgCUCCUGGC- -5' |
|||||||
| 16215 | 3' | -63.8 | NC_004065.1 | + | 73121 | 0.66 | 0.647968 |
|
Target: 5'- gGUGCCGgcggaggaucgggacCCCgacgCGCGACCCcAGGAUuCGg -3' miRNA: 3'- -UACGGC---------------GGGa---GCGCUGGGcUCCUG-GC- -5' |
|||||||
| 16215 | 3' | -63.8 | NC_004065.1 | + | 110707 | 0.65 | 0.699576 |
|
Target: 5'- -aGCCGCCgC-CGCGACUCGGccgaguauuuuauGGAUUGg -3' miRNA: 3'- uaCGGCGG-GaGCGCUGGGCU-------------CCUGGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home