miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16215 5' -56.1 NC_004065.1 + 130075 0.66 0.961999
Target:  5'- -gCGGCgGUGGUcGAcUACGGCGaugccguucGGCGCc -3'
miRNA:   3'- agGUCGaCACCA-CU-AUGCCGC---------CUGCG- -5'
16215 5' -56.1 NC_004065.1 + 34086 0.66 0.961999
Target:  5'- uUCCugAGCUGgaccaGGUGAU-CGGCGauaaaGCGCc -3'
miRNA:   3'- -AGG--UCGACa----CCACUAuGCCGCc----UGCG- -5'
16215 5' -56.1 NC_004065.1 + 136732 0.66 0.961663
Target:  5'- gUCAGCUGaccaaaaUGGgcgcGGUuucGCGGgGGAUGCg -3'
miRNA:   3'- aGGUCGAC-------ACCa---CUA---UGCCgCCUGCG- -5'
16215 5' -56.1 NC_004065.1 + 119992 0.66 0.958546
Target:  5'- gCCgAGCg--GGUGGaagaacACGGCGGGCGg -3'
miRNA:   3'- aGG-UCGacaCCACUa-----UGCCGCCUGCg -5'
16215 5' -56.1 NC_004065.1 + 20159 0.66 0.957106
Target:  5'- cCCAGUgucagccAUGCGGCGGACGUc -3'
miRNA:   3'- aGGUCGacaccacUAUGCCGCCUGCG- -5'
16215 5' -56.1 NC_004065.1 + 77633 0.66 0.954884
Target:  5'- gCCGacggcGCUGUcccugaugaaGGUGAUGCGGCaGGugaGCa -3'
miRNA:   3'- aGGU-----CGACA----------CCACUAUGCCG-CCug-CG- -5'
16215 5' -56.1 NC_004065.1 + 131288 0.66 0.954884
Target:  5'- cUCCGGggGuUGGUGAgcgACGGCgucaaGGugGUc -3'
miRNA:   3'- -AGGUCgaC-ACCACUa--UGCCG-----CCugCG- -5'
16215 5' -56.1 NC_004065.1 + 200788 0.66 0.954884
Target:  5'- -gCGGCgGUGGcGGgcgACGGCGucucGGCGCg -3'
miRNA:   3'- agGUCGaCACCaCUa--UGCCGC----CUGCG- -5'
16215 5' -56.1 NC_004065.1 + 33888 0.66 0.954884
Target:  5'- gUCCcaGGCgagGGUGAgACcGCGGAUGCc -3'
miRNA:   3'- -AGG--UCGacaCCACUaUGcCGCCUGCG- -5'
16215 5' -56.1 NC_004065.1 + 167428 0.66 0.951009
Target:  5'- gCCGGCg--GGg---GCGGCGG-CGCu -3'
miRNA:   3'- aGGUCGacaCCacuaUGCCGCCuGCG- -5'
16215 5' -56.1 NC_004065.1 + 225154 0.66 0.946917
Target:  5'- cUCCucCUG-GGUGAccgagccgaggGCGGCGGugGUg -3'
miRNA:   3'- -AGGucGACaCCACUa----------UGCCGCCugCG- -5'
16215 5' -56.1 NC_004065.1 + 57461 0.66 0.946917
Target:  5'- gCC-GUcGUGGcGAUggcGCGGCGGugGUg -3'
miRNA:   3'- aGGuCGaCACCaCUA---UGCCGCCugCG- -5'
16215 5' -56.1 NC_004065.1 + 182486 0.67 0.942607
Target:  5'- gUgGGCgGUGGUcccaAUugGGCGGugGUc -3'
miRNA:   3'- aGgUCGaCACCAc---UAugCCGCCugCG- -5'
16215 5' -56.1 NC_004065.1 + 71431 0.67 0.942607
Target:  5'- cCCGGCUcUGGUGGguggcccCGGCgaGGACGa -3'
miRNA:   3'- aGGUCGAcACCACUau-----GCCG--CCUGCg -5'
16215 5' -56.1 NC_004065.1 + 185468 0.67 0.942607
Target:  5'- --aGGUgGUGGUGGUGCGGgucgGGAgGCa -3'
miRNA:   3'- aggUCGaCACCACUAUGCCg---CCUgCG- -5'
16215 5' -56.1 NC_004065.1 + 7322 0.67 0.938075
Target:  5'- aUCgAGCcgGUGGUaccgGAcGCGGCGGA-GCc -3'
miRNA:   3'- -AGgUCGa-CACCA----CUaUGCCGCCUgCG- -5'
16215 5' -56.1 NC_004065.1 + 141625 0.67 0.938075
Target:  5'- gCCGGCgGUGGcGGcucggcgacggAgGGCGGugGCg -3'
miRNA:   3'- aGGUCGaCACCaCUa----------UgCCGCCugCG- -5'
16215 5' -56.1 NC_004065.1 + 131855 0.67 0.9362
Target:  5'- aCCAcGCUGagccuagGCGGCGGugGCg -3'
miRNA:   3'- aGGU-CGACaccacuaUGCCGCCugCG- -5'
16215 5' -56.1 NC_004065.1 + 66029 0.67 0.935249
Target:  5'- aCCGGagaGgagGGUGGUaacgcaccaucgcugACGGCGGACaGCg -3'
miRNA:   3'- aGGUCga-Ca--CCACUA---------------UGCCGCCUG-CG- -5'
16215 5' -56.1 NC_004065.1 + 115525 0.67 0.93332
Target:  5'- aCCuGuCUGUcaccGUGAUGCgGGCGGGCGa -3'
miRNA:   3'- aGGuC-GACAc---CACUAUG-CCGCCUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.