miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16216 3' -56.5 NC_004065.1 + 161929 0.66 0.952303
Target:  5'- gCUGcaccGCCGaCUCGUccGUCGUcuuGUCCAGa -3'
miRNA:   3'- aGACua--CGGC-GAGCA--CAGCG---CAGGUC- -5'
16216 3' -56.5 NC_004065.1 + 150796 0.66 0.948288
Target:  5'- -gUGAU-CCGCUgGUG-CGCGaugUCCAGg -3'
miRNA:   3'- agACUAcGGCGAgCACaGCGC---AGGUC- -5'
16216 3' -56.5 NC_004065.1 + 224556 0.66 0.948288
Target:  5'- --gGAUGUCGCcCGUGUagGCGUUCAc -3'
miRNA:   3'- agaCUACGGCGaGCACAg-CGCAGGUc -5'
16216 3' -56.5 NC_004065.1 + 169574 0.66 0.948288
Target:  5'- gCUGuUGCCGC---UGUCGCGgcUCCGGc -3'
miRNA:   3'- aGACuACGGCGagcACAGCGC--AGGUC- -5'
16216 3' -56.5 NC_004065.1 + 115457 0.66 0.944056
Target:  5'- -----cGCCGCgCGgGUCGCGaUCCGGa -3'
miRNA:   3'- agacuaCGGCGaGCaCAGCGC-AGGUC- -5'
16216 3' -56.5 NC_004065.1 + 7811 0.66 0.933484
Target:  5'- aCUGGUGgCGUgccggugaauggggUCGUGUCGCGcaaCCAu -3'
miRNA:   3'- aGACUACgGCG--------------AGCACAGCGCa--GGUc -5'
16216 3' -56.5 NC_004065.1 + 59627 0.67 0.930033
Target:  5'- cUUGAUGaCCGCgUCG-GUCGacacgGUCCAGc -3'
miRNA:   3'- aGACUAC-GGCG-AGCaCAGCg----CAGGUC- -5'
16216 3' -56.5 NC_004065.1 + 108637 0.67 0.919568
Target:  5'- gCUGGUGCUGaUCGUGUucUGCGUgCCGc -3'
miRNA:   3'- aGACUACGGCgAGCACA--GCGCA-GGUc -5'
16216 3' -56.5 NC_004065.1 + 87098 0.67 0.917921
Target:  5'- cCUGGUGCCGgaacucgacggccggCGUGUgGUgGUCCAGg -3'
miRNA:   3'- aGACUACGGCga-------------GCACAgCG-CAGGUC- -5'
16216 3' -56.5 NC_004065.1 + 47664 0.67 0.913431
Target:  5'- gCUGGUGUCGCagUCGUcGUCGgaaucguCGUCCAc -3'
miRNA:   3'- aGACUACGGCG--AGCA-CAGC-------GCAGGUc -5'
16216 3' -56.5 NC_004065.1 + 1260 0.67 0.9022
Target:  5'- aCUGGagGCCGggCGUGUCgGUGUUCGGu -3'
miRNA:   3'- aGACUa-CGGCgaGCACAG-CGCAGGUC- -5'
16216 3' -56.5 NC_004065.1 + 159742 0.67 0.9022
Target:  5'- gCUGAagGCCGCcgCGggGUUGCG-CCAGu -3'
miRNA:   3'- aGACUa-CGGCGa-GCa-CAGCGCaGGUC- -5'
16216 3' -56.5 NC_004065.1 + 188832 0.68 0.895971
Target:  5'- cCUGGUGCCGCUUGUccgucaggcaugGaCGCG-CCAu -3'
miRNA:   3'- aGACUACGGCGAGCA------------CaGCGCaGGUc -5'
16216 3' -56.5 NC_004065.1 + 191852 0.68 0.889528
Target:  5'- gCUGAUGCCGCUggcgCGgaucGcCGCGucuUCCAGc -3'
miRNA:   3'- aGACUACGGCGA----GCa---CaGCGC---AGGUC- -5'
16216 3' -56.5 NC_004065.1 + 82615 0.68 0.889528
Target:  5'- ---cGUGCUGCUgGacgcgGUUGCGUCCGGg -3'
miRNA:   3'- agacUACGGCGAgCa----CAGCGCAGGUC- -5'
16216 3' -56.5 NC_004065.1 + 147474 0.68 0.876007
Target:  5'- gUCUGcgGCCGCaUgGUGgC-CGUCCAGc -3'
miRNA:   3'- -AGACuaCGGCG-AgCACaGcGCAGGUC- -5'
16216 3' -56.5 NC_004065.1 + 207475 0.68 0.876007
Target:  5'- gUCUG-UGCCGCgUCGgaGUCagcuCGUCCAGa -3'
miRNA:   3'- -AGACuACGGCG-AGCa-CAGc---GCAGGUC- -5'
16216 3' -56.5 NC_004065.1 + 1047 0.69 0.846562
Target:  5'- -----cGCCGUUCGUGUCGCGgaucgcugUCCGu -3'
miRNA:   3'- agacuaCGGCGAGCACAGCGC--------AGGUc -5'
16216 3' -56.5 NC_004065.1 + 146579 0.71 0.7612
Target:  5'- --aGGUGCCGCUCGUGcCGgaGcCCGGc -3'
miRNA:   3'- agaCUACGGCGAGCACaGCg-CaGGUC- -5'
16216 3' -56.5 NC_004065.1 + 19984 0.71 0.742587
Target:  5'- gCUGuUGCUGCUgCGUGU-GCGUCCGc -3'
miRNA:   3'- aGACuACGGCGA-GCACAgCGCAGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.