miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16216 5' -55.7 NC_004065.1 + 105852 0.66 0.966953
Target:  5'- gGCCUGCGCGcacacccuggaGUCGGuguugACGCUGGCg- -3'
miRNA:   3'- -CGGACGUGC-----------CAGUCua---UGUGGUCGgc -5'
16216 5' -55.7 NC_004065.1 + 171640 0.66 0.963795
Target:  5'- aCCUGCgcaucACGGUgAGGccaagaaccUGCACCAGgCGc -3'
miRNA:   3'- cGGACG-----UGCCAgUCU---------AUGUGGUCgGC- -5'
16216 5' -55.7 NC_004065.1 + 158536 0.66 0.963795
Target:  5'- aGUCUGgACaGGUC-GAUACGgguCCAGUCGa -3'
miRNA:   3'- -CGGACgUG-CCAGuCUAUGU---GGUCGGC- -5'
16216 5' -55.7 NC_004065.1 + 196410 0.66 0.963795
Target:  5'- aCCUGCACGacaGGAUGCGCaacaugAGCCu -3'
miRNA:   3'- cGGACGUGCcagUCUAUGUGg-----UCGGc -5'
16216 5' -55.7 NC_004065.1 + 32906 0.66 0.963795
Target:  5'- uCCUGUcgGgGGUCGGAggcgACGaagaCGGCCGg -3'
miRNA:   3'- cGGACG--UgCCAGUCUa---UGUg---GUCGGC- -5'
16216 5' -55.7 NC_004065.1 + 63048 0.66 0.962475
Target:  5'- aCCUGCugGGggcggcgcagucgCAGGaguCGCCGGUCGc -3'
miRNA:   3'- cGGACGugCCa------------GUCUau-GUGGUCGGC- -5'
16216 5' -55.7 NC_004065.1 + 181196 0.66 0.960433
Target:  5'- cGUCUGCuGCGGUgAGAggauggUGCcguUCGGCCGg -3'
miRNA:   3'- -CGGACG-UGCCAgUCU------AUGu--GGUCGGC- -5'
16216 5' -55.7 NC_004065.1 + 44834 0.66 0.960433
Target:  5'- aCCgcgaCACGGaCAGcgACACgGGCCGg -3'
miRNA:   3'- cGGac--GUGCCaGUCuaUGUGgUCGGC- -5'
16216 5' -55.7 NC_004065.1 + 203108 0.66 0.958315
Target:  5'- aGCCUucuucgggguccggcGUGCGGUCgAGcgGCcucuggACCGGCCGg -3'
miRNA:   3'- -CGGA---------------CGUGCCAG-UCuaUG------UGGUCGGC- -5'
16216 5' -55.7 NC_004065.1 + 165379 0.66 0.956861
Target:  5'- gGCCaGCACGG-CGGAcGCG-CGGUCGa -3'
miRNA:   3'- -CGGaCGUGCCaGUCUaUGUgGUCGGC- -5'
16216 5' -55.7 NC_004065.1 + 119595 0.66 0.953075
Target:  5'- gGCCUGgACGuG-CAGG-ACGCCGGCgGc -3'
miRNA:   3'- -CGGACgUGC-CaGUCUaUGUGGUCGgC- -5'
16216 5' -55.7 NC_004065.1 + 45614 0.66 0.953075
Target:  5'- gGUCUaagGCACagaucaugggGGUCGGAUGCuuuCCAGCUa -3'
miRNA:   3'- -CGGA---CGUG----------CCAGUCUAUGu--GGUCGGc -5'
16216 5' -55.7 NC_004065.1 + 206718 0.66 0.953075
Target:  5'- uGCaUGCACGGUCAac-ACGCCgauaacgaaGGCCGc -3'
miRNA:   3'- -CGgACGUGCCAGUcuaUGUGG---------UCGGC- -5'
16216 5' -55.7 NC_004065.1 + 27486 0.66 0.953075
Target:  5'- uCCUGCccgguguagugaGCGGUCAGG-ACGCCAGa-- -3'
miRNA:   3'- cGGACG------------UGCCAGUCUaUGUGGUCggc -5'
16216 5' -55.7 NC_004065.1 + 87397 0.66 0.953075
Target:  5'- aCCUGCGCGaucgCGGAUucGCACUgcauGCCGa -3'
miRNA:   3'- cGGACGUGCca--GUCUA--UGUGGu---CGGC- -5'
16216 5' -55.7 NC_004065.1 + 78623 0.66 0.952684
Target:  5'- cGCCUGaggugaaCGCGGUCGGcgaggGCgACguGCCGa -3'
miRNA:   3'- -CGGAC-------GUGCCAGUCua---UG-UGguCGGC- -5'
16216 5' -55.7 NC_004065.1 + 82139 0.66 0.951897
Target:  5'- uCCggcgGCGCGGaCGcuguaccuccuggcGAgGCACCAGCCGa -3'
miRNA:   3'- cGGa---CGUGCCaGU--------------CUaUGUGGUCGGC- -5'
16216 5' -55.7 NC_004065.1 + 139908 0.66 0.949072
Target:  5'- gGCCU-C-CGGcCGGcgGCGCCAGCgGg -3'
miRNA:   3'- -CGGAcGuGCCaGUCuaUGUGGUCGgC- -5'
16216 5' -55.7 NC_004065.1 + 67837 0.66 0.949072
Target:  5'- cGCCgcagcagaaggGCACGGcgaAGAccUGCGCCgcAGCCGg -3'
miRNA:   3'- -CGGa----------CGUGCCag-UCU--AUGUGG--UCGGC- -5'
16216 5' -55.7 NC_004065.1 + 94908 0.66 0.948659
Target:  5'- cGCCcGCcCGGUgAuggugaggaugauGAUGCAgCAGCCGa -3'
miRNA:   3'- -CGGaCGuGCCAgU-------------CUAUGUgGUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.