miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16217 3' -53.6 NC_004065.1 + 175635 0.66 0.994201
Target:  5'- -gAGGCguuacuaCCGUcCGUCGGUGACagACAa -3'
miRNA:   3'- ggUCUGa------GGCA-GCAGCCACUGcaUGU- -5'
16217 3' -53.6 NC_004065.1 + 222898 0.66 0.994201
Target:  5'- cCCGGuCgUCuCGUCGUCGGUGuuGgaaucgACAg -3'
miRNA:   3'- -GGUCuG-AG-GCAGCAGCCACugCa-----UGU- -5'
16217 3' -53.6 NC_004065.1 + 62345 0.66 0.993349
Target:  5'- cUCGGGCUggGUCGUCGGUuuucGACGgcggugGCGg -3'
miRNA:   3'- -GGUCUGAggCAGCAGCCA----CUGCa-----UGU- -5'
16217 3' -53.6 NC_004065.1 + 198665 0.66 0.993349
Target:  5'- aUCAGACUCCGUCccgCGGauuuuccgGACGg--- -3'
miRNA:   3'- -GGUCUGAGGCAGca-GCCa-------CUGCaugu -5'
16217 3' -53.6 NC_004065.1 + 143143 0.66 0.9924
Target:  5'- gCCGcGAC-CUG-CGUCGGUGAUG-ACGa -3'
miRNA:   3'- -GGU-CUGaGGCaGCAGCCACUGCaUGU- -5'
16217 3' -53.6 NC_004065.1 + 131339 0.66 0.991346
Target:  5'- cCCAuGACgggucCCGUCGaUCGGgacGACGUGa- -3'
miRNA:   3'- -GGU-CUGa----GGCAGC-AGCCa--CUGCAUgu -5'
16217 3' -53.6 NC_004065.1 + 224884 0.66 0.991346
Target:  5'- uCCGGACgcguacacgUCCacgguGUCGUCGGUGAgCGgagGCc -3'
miRNA:   3'- -GGUCUG---------AGG-----CAGCAGCCACU-GCa--UGu -5'
16217 3' -53.6 NC_004065.1 + 91639 0.66 0.988894
Target:  5'- -uGGGCagCG-CGUUGGUGACGaGCAa -3'
miRNA:   3'- ggUCUGagGCaGCAGCCACUGCaUGU- -5'
16217 3' -53.6 NC_004065.1 + 74589 0.66 0.988894
Target:  5'- aCAGuuggugCCGUCGguggCGGUGGCGgcCGa -3'
miRNA:   3'- gGUCuga---GGCAGCa---GCCACUGCauGU- -5'
16217 3' -53.6 NC_004065.1 + 112862 0.67 0.987481
Target:  5'- gCGGACcCCGUCGgcgcugUCGGUGcCGUuCAc -3'
miRNA:   3'- gGUCUGaGGCAGC------AGCCACuGCAuGU- -5'
16217 3' -53.6 NC_004065.1 + 58834 0.67 0.987481
Target:  5'- -aAGACU----UGUCGGUGAUGUACAg -3'
miRNA:   3'- ggUCUGAggcaGCAGCCACUGCAUGU- -5'
16217 3' -53.6 NC_004065.1 + 198595 0.67 0.984243
Target:  5'- gCCAGugguGC-CCGUCGagcUCGGaGGCGUACu -3'
miRNA:   3'- -GGUC----UGaGGCAGC---AGCCaCUGCAUGu -5'
16217 3' -53.6 NC_004065.1 + 72708 0.67 0.984243
Target:  5'- cCCGGACUUCGUCaaggUGGUG-CGUucGCGc -3'
miRNA:   3'- -GGUCUGAGGCAGca--GCCACuGCA--UGU- -5'
16217 3' -53.6 NC_004065.1 + 191833 0.67 0.982402
Target:  5'- aUCAGug-CCGUCGU-GGUGACGgccGCGa -3'
miRNA:   3'- -GGUCugaGGCAGCAgCCACUGCa--UGU- -5'
16217 3' -53.6 NC_004065.1 + 72852 0.67 0.982402
Target:  5'- aCAGACagaaCGcCGUUGGUGGUGUACGa -3'
miRNA:   3'- gGUCUGag--GCaGCAGCCACUGCAUGU- -5'
16217 3' -53.6 NC_004065.1 + 55412 0.68 0.978243
Target:  5'- -gAGugUuucUCGUCGUggUGGUGGCGUGCu -3'
miRNA:   3'- ggUCugA---GGCAGCA--GCCACUGCAUGu -5'
16217 3' -53.6 NC_004065.1 + 100778 0.68 0.973399
Target:  5'- gCGGGCUCagcuUCGcgCGGUGACGUGg- -3'
miRNA:   3'- gGUCUGAGgc--AGCa-GCCACUGCAUgu -5'
16217 3' -53.6 NC_004065.1 + 190053 0.68 0.973399
Target:  5'- aCAGACaCCGUcaacggCGUCGGggaaACGUACAg -3'
miRNA:   3'- gGUCUGaGGCA------GCAGCCac--UGCAUGU- -5'
16217 3' -53.6 NC_004065.1 + 89224 0.68 0.973138
Target:  5'- aCCAcgucGCUCUcgucguaGUCGUCGGUGACGg--- -3'
miRNA:   3'- -GGUc---UGAGG-------CAGCAGCCACUGCaugu -5'
16217 3' -53.6 NC_004065.1 + 101519 0.68 0.970703
Target:  5'- -gAGGCaUCGUCGUCGGUGgagGCGgcaGCAg -3'
miRNA:   3'- ggUCUGaGGCAGCAGCCAC---UGCa--UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.