miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16217 5' -57.4 NC_004065.1 + 69880 0.66 0.920352
Target:  5'- uGGUGUCgGACuCGuucUCCUCGCAGAcGCCGu -3'
miRNA:   3'- -UUACAGgUUG-GU---GGGGGUGUCU-CGGC- -5'
16217 5' -57.4 NC_004065.1 + 74147 0.66 0.920352
Target:  5'- gGGUGcCCgGGCCGagaaCCCCGCAggcggcguucGAGCCGa -3'
miRNA:   3'- -UUACaGG-UUGGUg---GGGGUGU----------CUCGGC- -5'
16217 5' -57.4 NC_004065.1 + 31977 0.66 0.914772
Target:  5'- --cGUCCGcaacuCCAUCCCCuuGGAaccGCCGg -3'
miRNA:   3'- uuaCAGGUu----GGUGGGGGugUCU---CGGC- -5'
16217 5' -57.4 NC_004065.1 + 135324 0.66 0.908966
Target:  5'- ---cUCgAGCCGCCCuCCAaggucaGGGGCCGc -3'
miRNA:   3'- uuacAGgUUGGUGGG-GGUg-----UCUCGGC- -5'
16217 5' -57.4 NC_004065.1 + 46416 0.66 0.905375
Target:  5'- cGGUGUUCAACUACCUCUACgaauccccccuguucAcGAGCCa -3'
miRNA:   3'- -UUACAGGUUGGUGGGGGUG---------------U-CUCGGc -5'
16217 5' -57.4 NC_004065.1 + 114318 0.66 0.902937
Target:  5'- uGAUGUCCAuccuggcgGCCGCCgCgaaACAGAacGCCGu -3'
miRNA:   3'- -UUACAGGU--------UGGUGGgGg--UGUCU--CGGC- -5'
16217 5' -57.4 NC_004065.1 + 122052 0.66 0.902321
Target:  5'- --cGUCCGcuGCCggucucaACCCUuguagaugCACAGGGCCGa -3'
miRNA:   3'- uuaCAGGU--UGG-------UGGGG--------GUGUCUCGGC- -5'
16217 5' -57.4 NC_004065.1 + 22748 0.66 0.896685
Target:  5'- -uUGcUCCgu-CACCCCCAagacCAGAGCCa -3'
miRNA:   3'- uuAC-AGGuugGUGGGGGU----GUCUCGGc -5'
16217 5' -57.4 NC_004065.1 + 18504 0.66 0.896685
Target:  5'- --cGUCgucGCCACCgacgaCCCuCAGAGCCGa -3'
miRNA:   3'- uuaCAGgu-UGGUGG-----GGGuGUCUCGGC- -5'
16217 5' -57.4 NC_004065.1 + 34473 0.66 0.896685
Target:  5'- --gGUCuCGGCUAUCCCgGaCGGAGCCc -3'
miRNA:   3'- uuaCAG-GUUGGUGGGGgU-GUCUCGGc -5'
16217 5' -57.4 NC_004065.1 + 96022 0.66 0.896685
Target:  5'- ----cCCAcuACCGCCCCCGCGugcgugggcacGGGCCc -3'
miRNA:   3'- uuacaGGU--UGGUGGGGGUGU-----------CUCGGc -5'
16217 5' -57.4 NC_004065.1 + 34220 0.66 0.896685
Target:  5'- --cGUCCcACCcgACCCUucagCGCAGGGCCc -3'
miRNA:   3'- uuaCAGGuUGG--UGGGG----GUGUCUCGGc -5'
16217 5' -57.4 NC_004065.1 + 183101 0.66 0.895408
Target:  5'- cGAUGUCCAggucgucgucgugACCcaucgcgGCCCCCucCAG-GCCGu -3'
miRNA:   3'- -UUACAGGU-------------UGG-------UGGGGGu-GUCuCGGC- -5'
16217 5' -57.4 NC_004065.1 + 184489 0.66 0.890214
Target:  5'- -cUG-CC-GCCGCCgCCGCGGcGCCGg -3'
miRNA:   3'- uuACaGGuUGGUGGgGGUGUCuCGGC- -5'
16217 5' -57.4 NC_004065.1 + 210193 0.66 0.890214
Target:  5'- --cGUCCcgacaccGCCGCUCCCACAGAuaCa -3'
miRNA:   3'- uuaCAGGu------UGGUGGGGGUGUCUcgGc -5'
16217 5' -57.4 NC_004065.1 + 99513 0.67 0.883528
Target:  5'- uGAUGUgCAacACCACCUCCGuCAGcuGGUCGg -3'
miRNA:   3'- -UUACAgGU--UGGUGGGGGU-GUC--UCGGC- -5'
16217 5' -57.4 NC_004065.1 + 57904 0.67 0.882848
Target:  5'- uGGUGUCguugaagUAGCCACCgCgGuCAGAGCCGc -3'
miRNA:   3'- -UUACAG-------GUUGGUGGgGgU-GUCUCGGC- -5'
16217 5' -57.4 NC_004065.1 + 32206 0.67 0.88148
Target:  5'- cGUGUCCugUCACaCCCGCuccaccacaaacucGGAGCCGu -3'
miRNA:   3'- uUACAGGuuGGUGgGGGUG--------------UCUCGGC- -5'
16217 5' -57.4 NC_004065.1 + 202199 0.67 0.879414
Target:  5'- --cGgCCAGCCACCaCCCcgggggguacccgacACAGAGCUu -3'
miRNA:   3'- uuaCaGGUUGGUGG-GGG---------------UGUCUCGGc -5'
16217 5' -57.4 NC_004065.1 + 47349 0.67 0.87663
Target:  5'- --gGUCUGACCACCguagaaCGCAGAGCUc -3'
miRNA:   3'- uuaCAGGUUGGUGGgg----GUGUCUCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.