Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16217 | 5' | -57.4 | NC_004065.1 | + | 202199 | 0.67 | 0.879414 |
Target: 5'- --cGgCCAGCCACCaCCCcgggggguacccgacACAGAGCUu -3' miRNA: 3'- uuaCaGGUUGGUGG-GGG---------------UGUCUCGGc -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 12848 | 0.67 | 0.87663 |
Target: 5'- --cGcCCAACCACCUCgACgAGAGCa- -3' miRNA: 3'- uuaCaGGUUGGUGGGGgUG-UCUCGgc -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 216801 | 0.67 | 0.87663 |
Target: 5'- --cGUCUAACCACggagUCCGCAGGGuuGu -3' miRNA: 3'- uuaCAGGUUGGUGg---GGGUGUCUCggC- -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 32927 | 0.67 | 0.87663 |
Target: 5'- --gGUUCGugaGCUgACCCCCGC-GAGCCGc -3' miRNA: 3'- uuaCAGGU---UGG-UGGGGGUGuCUCGGC- -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 81444 | 0.67 | 0.87663 |
Target: 5'- -cUGaCCGGCaccagGCCCCgCACGGGGCUGa -3' miRNA: 3'- uuACaGGUUGg----UGGGG-GUGUCUCGGC- -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 147494 | 0.67 | 0.847012 |
Target: 5'- --cGUCCAGCC-CCUggACGGGGCCc -3' miRNA: 3'- uuaCAGGUUGGuGGGggUGUCUCGGc -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 166188 | 0.67 | 0.847012 |
Target: 5'- uGUGUCUGAgcauCCACUgCCGgAGAGCCa -3' miRNA: 3'- uUACAGGUU----GGUGGgGGUgUCUCGGc -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 37022 | 0.67 | 0.854709 |
Target: 5'- ----aCCGcuACCGCCCgCCAgAGAGUCGa -3' miRNA: 3'- uuacaGGU--UGGUGGG-GGUgUCUCGGC- -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 110582 | 0.67 | 0.869524 |
Target: 5'- -uUGUCCAucacGCUGCCCaagCACAGGGUCc -3' miRNA: 3'- uuACAGGU----UGGUGGGg--GUGUCUCGGc -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 122863 | 0.67 | 0.869524 |
Target: 5'- --cGUCCAGCC-CCaCCUGC-GAGCUGc -3' miRNA: 3'- uuaCAGGUUGGuGG-GGGUGuCUCGGC- -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 19199 | 0.67 | 0.869524 |
Target: 5'- ---cUCCGGCCGCUCUgCGC-GAGCCGg -3' miRNA: 3'- uuacAGGUUGGUGGGG-GUGuCUCGGC- -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 224587 | 0.67 | 0.869524 |
Target: 5'- --cGUCCGAUCGCCgUCGgGGAGuuGu -3' miRNA: 3'- uuaCAGGUUGGUGGgGGUgUCUCggC- -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 94615 | 0.67 | 0.869524 |
Target: 5'- --gGUCCGAUCGgCUCCugACGGGGUCGg -3' miRNA: 3'- uuaCAGGUUGGUgGGGG--UGUCUCGGC- -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 204445 | 0.68 | 0.842304 |
Target: 5'- -cUGcUCAGCCGCCUCUggaugaugaucaggcGCGGGGCCGa -3' miRNA: 3'- uuACaGGUUGGUGGGGG---------------UGUCUCGGC- -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 179272 | 0.68 | 0.839129 |
Target: 5'- cGUGUCUccuCCACgcgaCCaCACGGAGCCGc -3' miRNA: 3'- uUACAGGuu-GGUGg---GG-GUGUCUCGGC- -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 205504 | 0.68 | 0.839129 |
Target: 5'- --cGUCgCuGCCGCCgCCAUcuuGGGGCCGg -3' miRNA: 3'- uuaCAG-GuUGGUGGgGGUG---UCUCGGC- -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 52551 | 0.68 | 0.80588 |
Target: 5'- --cG-CCGugCGCCCCCGCcGAGCg- -3' miRNA: 3'- uuaCaGGUugGUGGGGGUGuCUCGgc -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 197791 | 0.68 | 0.822834 |
Target: 5'- cGGUGUCCGcguuggucACCAgCgCCCGCGGcGCCa -3' miRNA: 3'- -UUACAGGU--------UGGUgG-GGGUGUCuCGGc -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 226077 | 0.68 | 0.822834 |
Target: 5'- --cGUUUAACCACCaggccaagCCgUACGGAGCCGa -3' miRNA: 3'- uuaCAGGUUGGUGG--------GG-GUGUCUCGGC- -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 135389 | 0.68 | 0.831068 |
Target: 5'- cGGUGacgcgCCGGCCGCgCCCGaccccgucaGGAGCCGa -3' miRNA: 3'- -UUACa----GGUUGGUGgGGGUg--------UCUCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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