Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16217 | 5' | -57.4 | NC_004065.1 | + | 207221 | 1.05 | 0.005061 |
Target: 5'- aAAUGUCCAACCACCCCCACAGAGCCGc -3' miRNA: 3'- -UUACAGGUUGGUGGGGGUGUCUCGGC- -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 115108 | 0.76 | 0.39161 |
Target: 5'- aAAUGUgCCGccCCACCCCC-CGGAGCCa -3' miRNA: 3'- -UUACA-GGUu-GGUGGGGGuGUCUCGGc -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 128612 | 0.74 | 0.488146 |
Target: 5'- --cG-CCAGCCGCCCCCACGGucGuuGg -3' miRNA: 3'- uuaCaGGUUGGUGGGGGUGUCu-CggC- -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 28578 | 0.74 | 0.496548 |
Target: 5'- --cGUCCGGCUcgaGCCCCCACccgaccaGGAGCUGu -3' miRNA: 3'- uuaCAGGUUGG---UGGGGGUG-------UCUCGGC- -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 101307 | 0.73 | 0.525004 |
Target: 5'- --cGgCCAGCCGCCUCUcccugaaGCGGAGCCGa -3' miRNA: 3'- uuaCaGGUUGGUGGGGG-------UGUCUCGGC- -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 158588 | 0.72 | 0.574675 |
Target: 5'- --cGUCCucGCCgggGCCaCCCAcCAGAGCCGg -3' miRNA: 3'- uuaCAGGu-UGG---UGG-GGGU-GUCUCGGC- -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 17787 | 0.72 | 0.614372 |
Target: 5'- --gGUCCAG--ACCCCCGgGGAGCUGg -3' miRNA: 3'- uuaCAGGUUggUGGGGGUgUCUCGGC- -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 69301 | 0.71 | 0.654268 |
Target: 5'- aGAUGUCCAACCgACCgacgaCACAGAGCa- -3' miRNA: 3'- -UUACAGGUUGG-UGGgg---GUGUCUCGgc -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 94871 | 0.71 | 0.654268 |
Target: 5'- --gGUcCCGAagaGCCCUCACAGAGCCu -3' miRNA: 3'- uuaCA-GGUUgg-UGGGGGUGUCUCGGc -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 35849 | 0.71 | 0.664219 |
Target: 5'- --aGUCUuACCACCCCCGgGGGGaucCCGa -3' miRNA: 3'- uuaCAGGuUGGUGGGGGUgUCUC---GGC- -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 100037 | 0.71 | 0.664219 |
Target: 5'- --cGUCC-GCCGCCCCCGCGGcguucuGCgGa -3' miRNA: 3'- uuaCAGGuUGGUGGGGGUGUCu-----CGgC- -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 205567 | 0.71 | 0.664219 |
Target: 5'- cAUGUCCGAgCugCCCCACuacGCCa -3' miRNA: 3'- uUACAGGUUgGugGGGGUGucuCGGc -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 122852 | 0.7 | 0.693892 |
Target: 5'- --cGUCuCGACCGCCCUCuggcgGCAGAGCg- -3' miRNA: 3'- uuaCAG-GUUGGUGGGGG-----UGUCUCGgc -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 133898 | 0.7 | 0.723123 |
Target: 5'- --cGaCgGGCCACCCUCGCGGAGCg- -3' miRNA: 3'- uuaCaGgUUGGUGGGGGUGUCUCGgc -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 51844 | 0.7 | 0.742253 |
Target: 5'- -cUGUCCAucuCCugCCCCuucaugACAGAGCa- -3' miRNA: 3'- uuACAGGUu--GGugGGGG------UGUCUCGgc -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 187860 | 0.69 | 0.761017 |
Target: 5'- -cUGUCCGACCACCaggCCCGCuuAGCg- -3' miRNA: 3'- uuACAGGUUGGUGG---GGGUGucUCGgc -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 97669 | 0.69 | 0.788327 |
Target: 5'- -cUGcCCGugcuACCGCCUCCACA-AGCCGa -3' miRNA: 3'- uuACaGGU----UGGUGGGGGUGUcUCGGC- -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 162332 | 0.69 | 0.788327 |
Target: 5'- cGGUGcUCGACC-CCCUCAUcGAGCCGa -3' miRNA: 3'- -UUACaGGUUGGuGGGGGUGuCUCGGC- -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 206815 | 0.69 | 0.788327 |
Target: 5'- --aGUCCGugCGCCUgCACGGucagauacaccAGCCGa -3' miRNA: 3'- uuaCAGGUugGUGGGgGUGUC-----------UCGGC- -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 52551 | 0.68 | 0.80588 |
Target: 5'- --cG-CCGugCGCCCCCGCcGAGCg- -3' miRNA: 3'- uuaCaGGUugGUGGGGGUGuCUCGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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