miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16217 5' -57.4 NC_004065.1 + 548 0.68 0.814436
Target:  5'- -cUGUgCGAgCGCCCCCuguucgcgcaACGGGGCUGg -3'
miRNA:   3'- uuACAgGUUgGUGGGGG----------UGUCUCGGC- -5'
16217 5' -57.4 NC_004065.1 + 226077 0.68 0.822834
Target:  5'- --cGUUUAACCACCaggccaagCCgUACGGAGCCGa -3'
miRNA:   3'- uuaCAGGUUGGUGG--------GG-GUGUCUCGGC- -5'
16217 5' -57.4 NC_004065.1 + 197791 0.68 0.822834
Target:  5'- cGGUGUCCGcguuggucACCAgCgCCCGCGGcGCCa -3'
miRNA:   3'- -UUACAGGU--------UGGUgG-GGGUGUCuCGGc -5'
16217 5' -57.4 NC_004065.1 + 135389 0.68 0.831068
Target:  5'- cGGUGacgcgCCGGCCGCgCCCGaccccgucaGGAGCCGa -3'
miRNA:   3'- -UUACa----GGUUGGUGgGGGUg--------UCUCGGC- -5'
16217 5' -57.4 NC_004065.1 + 205504 0.68 0.839129
Target:  5'- --cGUCgCuGCCGCCgCCAUcuuGGGGCCGg -3'
miRNA:   3'- uuaCAG-GuUGGUGGgGGUG---UCUCGGC- -5'
16217 5' -57.4 NC_004065.1 + 179272 0.68 0.839129
Target:  5'- cGUGUCUccuCCACgcgaCCaCACGGAGCCGc -3'
miRNA:   3'- uUACAGGuu-GGUGg---GG-GUGUCUCGGC- -5'
16217 5' -57.4 NC_004065.1 + 204445 0.68 0.842304
Target:  5'- -cUGcUCAGCCGCCUCUggaugaugaucaggcGCGGGGCCGa -3'
miRNA:   3'- uuACaGGUUGGUGGGGG---------------UGUCUCGGC- -5'
16217 5' -57.4 NC_004065.1 + 166188 0.67 0.847012
Target:  5'- uGUGUCUGAgcauCCACUgCCGgAGAGCCa -3'
miRNA:   3'- uUACAGGUU----GGUGGgGGUgUCUCGGc -5'
16217 5' -57.4 NC_004065.1 + 147494 0.67 0.847012
Target:  5'- --cGUCCAGCC-CCUggACGGGGCCc -3'
miRNA:   3'- uuaCAGGUUGGuGGGggUGUCUCGGc -5'
16217 5' -57.4 NC_004065.1 + 37022 0.67 0.854709
Target:  5'- ----aCCGcuACCGCCCgCCAgAGAGUCGa -3'
miRNA:   3'- uuacaGGU--UGGUGGG-GGUgUCUCGGC- -5'
16217 5' -57.4 NC_004065.1 + 94615 0.67 0.869524
Target:  5'- --gGUCCGAUCGgCUCCugACGGGGUCGg -3'
miRNA:   3'- uuaCAGGUUGGUgGGGG--UGUCUCGGC- -5'
16217 5' -57.4 NC_004065.1 + 110582 0.67 0.869524
Target:  5'- -uUGUCCAucacGCUGCCCaagCACAGGGUCc -3'
miRNA:   3'- uuACAGGU----UGGUGGGg--GUGUCUCGGc -5'
16217 5' -57.4 NC_004065.1 + 122863 0.67 0.869524
Target:  5'- --cGUCCAGCC-CCaCCUGC-GAGCUGc -3'
miRNA:   3'- uuaCAGGUUGGuGG-GGGUGuCUCGGC- -5'
16217 5' -57.4 NC_004065.1 + 19199 0.67 0.869524
Target:  5'- ---cUCCGGCCGCUCUgCGC-GAGCCGg -3'
miRNA:   3'- uuacAGGUUGGUGGGG-GUGuCUCGGC- -5'
16217 5' -57.4 NC_004065.1 + 114752 0.67 0.869524
Target:  5'- --gGUUCucCCACUUCCAUGGAGUCGg -3'
miRNA:   3'- uuaCAGGuuGGUGGGGGUGUCUCGGC- -5'
16217 5' -57.4 NC_004065.1 + 224587 0.67 0.869524
Target:  5'- --cGUCCGAUCGCCgUCGgGGAGuuGu -3'
miRNA:   3'- uuaCAGGUUGGUGGgGGUgUCUCggC- -5'
16217 5' -57.4 NC_004065.1 + 32927 0.67 0.87663
Target:  5'- --gGUUCGugaGCUgACCCCCGC-GAGCCGc -3'
miRNA:   3'- uuaCAGGU---UGG-UGGGGGUGuCUCGGC- -5'
16217 5' -57.4 NC_004065.1 + 12848 0.67 0.87663
Target:  5'- --cGcCCAACCACCUCgACgAGAGCa- -3'
miRNA:   3'- uuaCaGGUUGGUGGGGgUG-UCUCGgc -5'
16217 5' -57.4 NC_004065.1 + 47349 0.67 0.87663
Target:  5'- --gGUCUGACCACCguagaaCGCAGAGCUc -3'
miRNA:   3'- uuaCAGGUUGGUGGgg----GUGUCUCGGc -5'
16217 5' -57.4 NC_004065.1 + 216801 0.67 0.87663
Target:  5'- --cGUCUAACCACggagUCCGCAGGGuuGu -3'
miRNA:   3'- uuaCAGGUUGGUGg---GGGUGUCUCggC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.