Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16217 | 5' | -57.4 | NC_004065.1 | + | 207221 | 1.05 | 0.005061 |
Target: 5'- aAAUGUCCAACCACCCCCACAGAGCCGc -3' miRNA: 3'- -UUACAGGUUGGUGGGGGUGUCUCGGC- -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 115108 | 0.76 | 0.39161 |
Target: 5'- aAAUGUgCCGccCCACCCCC-CGGAGCCa -3' miRNA: 3'- -UUACA-GGUu-GGUGGGGGuGUCUCGGc -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 128612 | 0.74 | 0.488146 |
Target: 5'- --cG-CCAGCCGCCCCCACGGucGuuGg -3' miRNA: 3'- uuaCaGGUUGGUGGGGGUGUCu-CggC- -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 94871 | 0.71 | 0.654268 |
Target: 5'- --gGUcCCGAagaGCCCUCACAGAGCCu -3' miRNA: 3'- uuaCA-GGUUgg-UGGGGGUGUCUCGGc -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 100037 | 0.71 | 0.664219 |
Target: 5'- --cGUCC-GCCGCCCCCGCGGcguucuGCgGa -3' miRNA: 3'- uuaCAGGuUGGUGGGGGUGUCu-----CGgC- -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 133898 | 0.7 | 0.723123 |
Target: 5'- --cGaCgGGCCACCCUCGCGGAGCg- -3' miRNA: 3'- uuaCaGgUUGGUGGGGGUGUCUCGgc -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 187860 | 0.69 | 0.761017 |
Target: 5'- -cUGUCCGACCACCaggCCCGCuuAGCg- -3' miRNA: 3'- uuACAGGUUGGUGG---GGGUGucUCGgc -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 206815 | 0.69 | 0.788327 |
Target: 5'- --aGUCCGugCGCCUgCACGGucagauacaccAGCCGa -3' miRNA: 3'- uuaCAGGUugGUGGGgGUGUC-----------UCGGC- -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 162332 | 0.69 | 0.788327 |
Target: 5'- cGGUGcUCGACC-CCCUCAUcGAGCCGa -3' miRNA: 3'- -UUACaGGUUGGuGGGGGUGuCUCGGC- -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 52551 | 0.68 | 0.80588 |
Target: 5'- --cG-CCGugCGCCCCCGCcGAGCg- -3' miRNA: 3'- uuaCaGGUugGUGGGGGUGuCUCGgc -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 110582 | 0.67 | 0.869524 |
Target: 5'- -uUGUCCAucacGCUGCCCaagCACAGGGUCc -3' miRNA: 3'- uuACAGGU----UGGUGGGg--GUGUCUCGGc -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 37022 | 0.67 | 0.854709 |
Target: 5'- ----aCCGcuACCGCCCgCCAgAGAGUCGa -3' miRNA: 3'- uuacaGGU--UGGUGGG-GGUgUCUCGGC- -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 166188 | 0.67 | 0.847012 |
Target: 5'- uGUGUCUGAgcauCCACUgCCGgAGAGCCa -3' miRNA: 3'- uUACAGGUU----GGUGGgGGUgUCUCGGc -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 147494 | 0.67 | 0.847012 |
Target: 5'- --cGUCCAGCC-CCUggACGGGGCCc -3' miRNA: 3'- uuaCAGGUUGGuGGGggUGUCUCGGc -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 135389 | 0.68 | 0.831068 |
Target: 5'- cGGUGacgcgCCGGCCGCgCCCGaccccgucaGGAGCCGa -3' miRNA: 3'- -UUACa----GGUUGGUGgGGGUg--------UCUCGGC- -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 226077 | 0.68 | 0.822834 |
Target: 5'- --cGUUUAACCACCaggccaagCCgUACGGAGCCGa -3' miRNA: 3'- uuaCAGGUUGGUGG--------GG-GUGUCUCGGC- -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 197791 | 0.68 | 0.822834 |
Target: 5'- cGGUGUCCGcguuggucACCAgCgCCCGCGGcGCCa -3' miRNA: 3'- -UUACAGGU--------UGGUgG-GGGUGUCuCGGc -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 96022 | 0.66 | 0.896685 |
Target: 5'- ----cCCAcuACCGCCCCCGCGugcgugggcacGGGCCc -3' miRNA: 3'- uuacaGGU--UGGUGGGGGUGU-----------CUCGGc -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 101307 | 0.73 | 0.525004 |
Target: 5'- --cGgCCAGCCGCCUCUcccugaaGCGGAGCCGa -3' miRNA: 3'- uuaCaGGUUGGUGGGGG-------UGUCUCGGC- -5' |
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16217 | 5' | -57.4 | NC_004065.1 | + | 158588 | 0.72 | 0.574675 |
Target: 5'- --cGUCCucGCCgggGCCaCCCAcCAGAGCCGg -3' miRNA: 3'- uuaCAGGu-UGG---UGG-GGGU-GUCUCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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