miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16217 5' -57.4 NC_004065.1 + 28578 0.74 0.496548
Target:  5'- --cGUCCGGCUcgaGCCCCCACccgaccaGGAGCUGu -3'
miRNA:   3'- uuaCAGGUUGG---UGGGGGUG-------UCUCGGC- -5'
16217 5' -57.4 NC_004065.1 + 47349 0.67 0.87663
Target:  5'- --gGUCUGACCACCguagaaCGCAGAGCUc -3'
miRNA:   3'- uuaCAGGUUGGUGGgg----GUGUCUCGGc -5'
16217 5' -57.4 NC_004065.1 + 184489 0.66 0.890214
Target:  5'- -cUG-CC-GCCGCCgCCGCGGcGCCGg -3'
miRNA:   3'- uuACaGGuUGGUGGgGGUGUCuCGGC- -5'
16217 5' -57.4 NC_004065.1 + 96022 0.66 0.896685
Target:  5'- ----cCCAcuACCGCCCCCGCGugcgugggcacGGGCCc -3'
miRNA:   3'- uuacaGGU--UGGUGGGGGUGU-----------CUCGGc -5'
16217 5' -57.4 NC_004065.1 + 69301 0.71 0.654268
Target:  5'- aGAUGUCCAACCgACCgacgaCACAGAGCa- -3'
miRNA:   3'- -UUACAGGUUGG-UGGgg---GUGUCUCGgc -5'
16217 5' -57.4 NC_004065.1 + 35849 0.71 0.664219
Target:  5'- --aGUCUuACCACCCCCGgGGGGaucCCGa -3'
miRNA:   3'- uuaCAGGuUGGUGGGGGUgUCUC---GGC- -5'
16217 5' -57.4 NC_004065.1 + 122852 0.7 0.693892
Target:  5'- --cGUCuCGACCGCCCUCuggcgGCAGAGCg- -3'
miRNA:   3'- uuaCAG-GUUGGUGGGGG-----UGUCUCGgc -5'
16217 5' -57.4 NC_004065.1 + 51844 0.7 0.742253
Target:  5'- -cUGUCCAucuCCugCCCCuucaugACAGAGCa- -3'
miRNA:   3'- uuACAGGUu--GGugGGGG------UGUCUCGgc -5'
16217 5' -57.4 NC_004065.1 + 179272 0.68 0.839129
Target:  5'- cGUGUCUccuCCACgcgaCCaCACGGAGCCGc -3'
miRNA:   3'- uUACAGGuu-GGUGg---GG-GUGUCUCGGC- -5'
16217 5' -57.4 NC_004065.1 + 32927 0.67 0.87663
Target:  5'- --gGUUCGugaGCUgACCCCCGC-GAGCCGc -3'
miRNA:   3'- uuaCAGGU---UGG-UGGGGGUGuCUCGGC- -5'
16217 5' -57.4 NC_004065.1 + 204445 0.68 0.842304
Target:  5'- -cUGcUCAGCCGCCUCUggaugaugaucaggcGCGGGGCCGa -3'
miRNA:   3'- uuACaGGUUGGUGGGGG---------------UGUCUCGGC- -5'
16217 5' -57.4 NC_004065.1 + 548 0.68 0.814436
Target:  5'- -cUGUgCGAgCGCCCCCuguucgcgcaACGGGGCUGg -3'
miRNA:   3'- uuACAgGUUgGUGGGGG----------UGUCUCGGC- -5'
16217 5' -57.4 NC_004065.1 + 101307 0.73 0.525004
Target:  5'- --cGgCCAGCCGCCUCUcccugaaGCGGAGCCGa -3'
miRNA:   3'- uuaCaGGUUGGUGGGGG-------UGUCUCGGC- -5'
16217 5' -57.4 NC_004065.1 + 94615 0.67 0.869524
Target:  5'- --gGUCCGAUCGgCUCCugACGGGGUCGg -3'
miRNA:   3'- uuaCAGGUUGGUgGGGG--UGUCUCGGC- -5'
16217 5' -57.4 NC_004065.1 + 158588 0.72 0.574675
Target:  5'- --cGUCCucGCCgggGCCaCCCAcCAGAGCCGg -3'
miRNA:   3'- uuaCAGGu-UGG---UGG-GGGU-GUCUCGGC- -5'
16217 5' -57.4 NC_004065.1 + 97669 0.69 0.788327
Target:  5'- -cUGcCCGugcuACCGCCUCCACA-AGCCGa -3'
miRNA:   3'- uuACaGGU----UGGUGGGGGUGUcUCGGC- -5'
16217 5' -57.4 NC_004065.1 + 114752 0.67 0.869524
Target:  5'- --gGUUCucCCACUUCCAUGGAGUCGg -3'
miRNA:   3'- uuaCAGGuuGGUGGGGGUGUCUCGGC- -5'
16217 5' -57.4 NC_004065.1 + 81444 0.67 0.87663
Target:  5'- -cUGaCCGGCaccagGCCCCgCACGGGGCUGa -3'
miRNA:   3'- uuACaGGUUGg----UGGGG-GUGUCUCGGC- -5'
16217 5' -57.4 NC_004065.1 + 17787 0.72 0.614372
Target:  5'- --gGUCCAG--ACCCCCGgGGAGCUGg -3'
miRNA:   3'- uuaCAGGUUggUGGGGGUgUCUCGGC- -5'
16217 5' -57.4 NC_004065.1 + 205567 0.71 0.664219
Target:  5'- cAUGUCCGAgCugCCCCACuacGCCa -3'
miRNA:   3'- uUACAGGUUgGugGGGGUGucuCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.