miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16218 3' -51.2 NC_004065.1 + 52805 0.66 0.99796
Target:  5'- aGAGGCUCUCUUCugugacaagaacGGCACCGUcAGCa- -3'
miRNA:   3'- -UUCUGGGGGAAG------------UUGUGGCAuUUGca -5'
16218 3' -51.2 NC_004065.1 + 94255 0.66 0.99796
Target:  5'- --aGCCCCCUcCggUGCCGUucACGa -3'
miRNA:   3'- uucUGGGGGAaGuuGUGGCAuuUGCa -5'
16218 3' -51.2 NC_004065.1 + 138365 0.66 0.997924
Target:  5'- -cGACCCCCgucgUCAucGCGCCGcuguugaUAGACc- -3'
miRNA:   3'- uuCUGGGGGa---AGU--UGUGGC-------AUUUGca -5'
16218 3' -51.2 NC_004065.1 + 57062 0.66 0.99785
Target:  5'- cAAGGCCCCg-UCAACGUCGUugucauagaccaacGAACGUg -3'
miRNA:   3'- -UUCUGGGGgaAGUUGUGGCA--------------UUUGCA- -5'
16218 3' -51.2 NC_004065.1 + 159550 0.66 0.997576
Target:  5'- cGGugUCCCUgaaCGcCGCCGUGAAgGUg -3'
miRNA:   3'- uUCugGGGGAa--GUuGUGGCAUUUgCA- -5'
16218 3' -51.2 NC_004065.1 + 209281 0.66 0.997576
Target:  5'- --cACCCUCUUCAcccuCGCCGUGAuCGc -3'
miRNA:   3'- uucUGGGGGAAGUu---GUGGCAUUuGCa -5'
16218 3' -51.2 NC_004065.1 + 186037 0.66 0.997576
Target:  5'- aGGGACCCCg--CG--ACCGUGGACGa -3'
miRNA:   3'- -UUCUGGGGgaaGUugUGGCAUUUGCa -5'
16218 3' -51.2 NC_004065.1 + 61569 0.66 0.997576
Target:  5'- gGGGACggcguuCCUCUUgGACGCCGUcucGACGUa -3'
miRNA:   3'- -UUCUG------GGGGAAgUUGUGGCAu--UUGCA- -5'
16218 3' -51.2 NC_004065.1 + 194808 0.66 0.997576
Target:  5'- -cGAgCCCCUg-AACGCCGUG-GCGg -3'
miRNA:   3'- uuCUgGGGGAagUUGUGGCAUuUGCa -5'
16218 3' -51.2 NC_004065.1 + 207169 0.66 0.997134
Target:  5'- --cGCCaCCUUCGACACCGUcccAGACu- -3'
miRNA:   3'- uucUGGgGGAAGUUGUGGCA---UUUGca -5'
16218 3' -51.2 NC_004065.1 + 113995 0.66 0.997134
Target:  5'- -cGGCCUCCUcgcCAGCACgGUcGACGa -3'
miRNA:   3'- uuCUGGGGGAa--GUUGUGgCAuUUGCa -5'
16218 3' -51.2 NC_004065.1 + 121346 0.66 0.997134
Target:  5'- aAAGACCUUCcaacaGACACCGUcgGCGa -3'
miRNA:   3'- -UUCUGGGGGaag--UUGUGGCAuuUGCa -5'
16218 3' -51.2 NC_004065.1 + 37499 0.66 0.997134
Target:  5'- cGGACCCCUggCGGCucuCCGccAAGCGg -3'
miRNA:   3'- uUCUGGGGGaaGUUGu--GGCa-UUUGCa -5'
16218 3' -51.2 NC_004065.1 + 10121 0.66 0.996626
Target:  5'- cAGGCCCaUCUUCAACACUuaAAAUGa -3'
miRNA:   3'- uUCUGGG-GGAAGUUGUGGcaUUUGCa -5'
16218 3' -51.2 NC_004065.1 + 45895 0.66 0.996626
Target:  5'- gGGGGCUCCgUUCAcCGCuCGUuAACGUa -3'
miRNA:   3'- -UUCUGGGGgAAGUuGUG-GCAuUUGCA- -5'
16218 3' -51.2 NC_004065.1 + 37385 0.66 0.996626
Target:  5'- cGAGAUCCaaauaacguguaCCUUCGACGCgGUGuccGACGg -3'
miRNA:   3'- -UUCUGGG------------GGAAGUUGUGgCAU---UUGCa -5'
16218 3' -51.2 NC_004065.1 + 138205 0.66 0.996572
Target:  5'- -cGACCCCCgcuccuguauaauUUCGAUGCCGggGAgGUc -3'
miRNA:   3'- uuCUGGGGG-------------AAGUUGUGGCauUUgCA- -5'
16218 3' -51.2 NC_004065.1 + 52535 0.66 0.995389
Target:  5'- -uGACCCCCggCGGCcccGCCGU--GCGc -3'
miRNA:   3'- uuCUGGGGGaaGUUG---UGGCAuuUGCa -5'
16218 3' -51.2 NC_004065.1 + 16295 0.66 0.995389
Target:  5'- cAGACCUCCUUC--CACCGUugguauAUGUg -3'
miRNA:   3'- uUCUGGGGGAAGuuGUGGCAuu----UGCA- -5'
16218 3' -51.2 NC_004065.1 + 46262 0.66 0.995389
Target:  5'- gAAGAUaaCCCgUUCGACcuggucgagGCCGUGGGCGa -3'
miRNA:   3'- -UUCUG--GGGgAAGUUG---------UGGCAUUUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.