Results 41 - 59 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16218 | 3' | -51.2 | NC_004065.1 | + | 90679 | 0.68 | 0.987903 |
Target: 5'- -uGGCCCCCUUgcCGGCGCUGggcACGa -3' miRNA: 3'- uuCUGGGGGAA--GUUGUGGCauuUGCa -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 106689 | 0.68 | 0.984585 |
Target: 5'- cAAGACCCUgUUCAAgACgGUGGAgGa -3' miRNA: 3'- -UUCUGGGGgAAGUUgUGgCAUUUgCa -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 31917 | 0.69 | 0.978369 |
Target: 5'- cAGACCUCgUUCuggGACGCCcGUAGGCGa -3' miRNA: 3'- uUCUGGGGgAAG---UUGUGG-CAUUUGCa -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 140265 | 0.69 | 0.973303 |
Target: 5'- -uGGCCCUCaUCAACGCCGcgucguACGUg -3' miRNA: 3'- uuCUGGGGGaAGUUGUGGCauu---UGCA- -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 39357 | 0.69 | 0.97047 |
Target: 5'- aGAGAUCCUCUUCGAgACCucGUGGACu- -3' miRNA: 3'- -UUCUGGGGGAAGUUgUGG--CAUUUGca -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 50454 | 0.69 | 0.975933 |
Target: 5'- -uGGCgCCCCUUCAGCGCCcagcACGa -3' miRNA: 3'- uuCUG-GGGGAAGUUGUGGcauuUGCa -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 152507 | 0.69 | 0.980618 |
Target: 5'- gAGGACCCCCUgcgAGCagGCCGUcuACGc -3' miRNA: 3'- -UUCUGGGGGAag-UUG--UGGCAuuUGCa -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 202019 | 0.7 | 0.960692 |
Target: 5'- -uGGCgUCCUccUCGGCGCUGUAGACGa -3' miRNA: 3'- uuCUGgGGGA--AGUUGUGGCAUUUGCa -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 55559 | 0.7 | 0.964171 |
Target: 5'- -cGugCCCCgggUCGACGuaGUAGACGg -3' miRNA: 3'- uuCugGGGGa--AGUUGUggCAUUUGCa -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 70090 | 0.7 | 0.959238 |
Target: 5'- cGGACCCCgaggcgacgagCAGCACCGgcAGCGg -3' miRNA: 3'- uUCUGGGGgaa--------GUUGUGGCauUUGCa -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 198363 | 0.7 | 0.95997 |
Target: 5'- uGGGACCgCCggguggucggcgUCAACGCCGUGGGCc- -3' miRNA: 3'- -UUCUGGgGGa-----------AGUUGUGGCAUUUGca -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 97584 | 0.7 | 0.964171 |
Target: 5'- -cGGCgCCCUUCGACAUgcUGAACGUg -3' miRNA: 3'- uuCUGgGGGAAGUUGUGgcAUUUGCA- -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 155931 | 0.7 | 0.967428 |
Target: 5'- uAGGACCUgUUUCGGCACCGU---CGUg -3' miRNA: 3'- -UUCUGGGgGAAGUUGUGGCAuuuGCA- -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 131188 | 0.71 | 0.939814 |
Target: 5'- -cGACCCCCU--GACAUCGgcGGCGc -3' miRNA: 3'- uuCUGGGGGAagUUGUGGCauUUGCa -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 100708 | 0.71 | 0.939814 |
Target: 5'- -uGACCCCCUgguccUCGAUcCCGUGuACGUc -3' miRNA: 3'- uuCUGGGGGA-----AGUUGuGGCAUuUGCA- -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 120508 | 0.71 | 0.929775 |
Target: 5'- -cGACCCCCUcUUGGCGCCGcucGACGa -3' miRNA: 3'- uuCUGGGGGA-AGUUGUGGCau-UUGCa -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 123610 | 0.77 | 0.679798 |
Target: 5'- -cGAUCCCCgugagCAACACCGUGGugGa -3' miRNA: 3'- uuCUGGGGGaa---GUUGUGGCAUUugCa -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 5120 | 0.79 | 0.607262 |
Target: 5'- cGGGCCUCCgcucaccgaCGACACCGUGGACGUg -3' miRNA: 3'- uUCUGGGGGaa-------GUUGUGGCAUUUGCA- -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 207584 | 1.03 | 0.026311 |
Target: 5'- cAGACCCCCUUCAACACCGUAAACGUc -3' miRNA: 3'- uUCUGGGGGAAGUUGUGGCAUUUGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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