Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16218 | 3' | -51.2 | NC_004065.1 | + | 23454 | 0.68 | 0.986321 |
Target: 5'- cGAGGCCCCCaUCGuGCACacgcaGUAAACu- -3' miRNA: 3'- -UUCUGGGGGaAGU-UGUGg----CAUUUGca -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 63717 | 0.68 | 0.982687 |
Target: 5'- -uGAUCgCCUgguggUCGGCGCCGUAGACa- -3' miRNA: 3'- uuCUGGgGGA-----AGUUGUGGCAUUUGca -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 10683 | 0.68 | 0.982687 |
Target: 5'- uAAGAUCCCgUaCAGCACCG-AGAUGg -3' miRNA: 3'- -UUCUGGGGgAaGUUGUGGCaUUUGCa -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 82403 | 0.67 | 0.992863 |
Target: 5'- gGGGACCUuaUCggCGAUAUCGUAGACGg -3' miRNA: 3'- -UUCUGGG--GGaaGUUGUGGCAUUUGCa -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 173849 | 0.67 | 0.993805 |
Target: 5'- -uGGCCCCCcggcugggUCuuCACCGUGAuCGa -3' miRNA: 3'- uuCUGGGGGa-------AGuuGUGGCAUUuGCa -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 35820 | 0.67 | 0.991811 |
Target: 5'- aGGGAUCCCCgUCucCAUCGUGAcgGCGg -3' miRNA: 3'- -UUCUGGGGGaAGuuGUGGCAUU--UGCa -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 119436 | 0.67 | 0.992863 |
Target: 5'- cAGGACCCUgugCUUgGGCAgCGUGAugGa -3' miRNA: 3'- -UUCUGGGG---GAAgUUGUgGCAUUugCa -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 71663 | 0.67 | 0.991811 |
Target: 5'- aAGGGCCUCCUcagcagCAGCAgCGgcGGCGg -3' miRNA: 3'- -UUCUGGGGGAa-----GUUGUgGCauUUGCa -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 87318 | 0.67 | 0.993805 |
Target: 5'- cAGGACCCCC---GACGCCGgguccagGAGCa- -3' miRNA: 3'- -UUCUGGGGGaagUUGUGGCa------UUUGca -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 107818 | 0.67 | 0.994644 |
Target: 5'- cGGGCCaccagCCUguaGGCGCCGUAGAUGg -3' miRNA: 3'- uUCUGGg----GGAag-UUGUGGCAUUUGCa -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 109502 | 0.67 | 0.993805 |
Target: 5'- gGAGACCC---UCGACAUCGUcGAGCGg -3' miRNA: 3'- -UUCUGGGggaAGUUGUGGCA-UUUGCa -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 148591 | 0.67 | 0.993805 |
Target: 5'- aGAGAUCCCCguccagUUCucCGCCGggGACGa -3' miRNA: 3'- -UUCUGGGGG------AAGuuGUGGCauUUGCa -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 101405 | 0.67 | 0.994644 |
Target: 5'- -uGACCUCCgcCAACgACCGUGggGGCGg -3' miRNA: 3'- uuCUGGGGGaaGUUG-UGGCAU--UUGCa -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 35395 | 0.67 | 0.994644 |
Target: 5'- uGGACCgUCaUCGGCGCCGUGGGagaGUa -3' miRNA: 3'- uUCUGGgGGaAGUUGUGGCAUUUg--CA- -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 80494 | 0.67 | 0.993805 |
Target: 5'- aAGGGCUUCCUugUCGAUGCCGUAGAa-- -3' miRNA: 3'- -UUCUGGGGGA--AGUUGUGGCAUUUgca -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 221321 | 0.67 | 0.993534 |
Target: 5'- cAGGCCCCCcuaacgcgcuacuggCGAcCACCGUcGACGUu -3' miRNA: 3'- uUCUGGGGGaa-------------GUU-GUGGCAuUUGCA- -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 81691 | 0.67 | 0.993805 |
Target: 5'- -uGACCaaggaCggCGACACCGUGGGCGa -3' miRNA: 3'- uuCUGGgg---GaaGUUGUGGCAUUUGCa -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 61569 | 0.66 | 0.997576 |
Target: 5'- gGGGACggcguuCCUCUUgGACGCCGUcucGACGUa -3' miRNA: 3'- -UUCUG------GGGGAAgUUGUGGCAu--UUGCA- -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 52805 | 0.66 | 0.99796 |
Target: 5'- aGAGGCUCUCUUCugugacaagaacGGCACCGUcAGCa- -3' miRNA: 3'- -UUCUGGGGGAAG------------UUGUGGCAuUUGca -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 57062 | 0.66 | 0.99785 |
Target: 5'- cAAGGCCCCg-UCAACGUCGUugucauagaccaacGAACGUg -3' miRNA: 3'- -UUCUGGGGgaAGUUGUGGCA--------------UUUGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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