miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16218 3' -51.2 NC_004065.1 + 9011 0.68 0.986321
Target:  5'- cGGGuACCCCCUUgCAACugCGg--GCGg -3'
miRNA:   3'- -UUC-UGGGGGAA-GUUGugGCauuUGCa -5'
16218 3' -51.2 NC_004065.1 + 23454 0.68 0.986321
Target:  5'- cGAGGCCCCCaUCGuGCACacgcaGUAAACu- -3'
miRNA:   3'- -UUCUGGGGGaAGU-UGUGg----CAUUUGca -5'
16218 3' -51.2 NC_004065.1 + 90679 0.68 0.987903
Target:  5'- -uGGCCCCCUUgcCGGCGCUGggcACGa -3'
miRNA:   3'- uuCUGGGGGAA--GUUGUGGCauuUGCa -5'
16218 3' -51.2 NC_004065.1 + 71663 0.67 0.991811
Target:  5'- aAGGGCCUCCUcagcagCAGCAgCGgcGGCGg -3'
miRNA:   3'- -UUCUGGGGGAa-----GUUGUgGCauUUGCa -5'
16218 3' -51.2 NC_004065.1 + 35820 0.67 0.991811
Target:  5'- aGGGAUCCCCgUCucCAUCGUGAcgGCGg -3'
miRNA:   3'- -UUCUGGGGGaAGuuGUGGCAUU--UGCa -5'
16218 3' -51.2 NC_004065.1 + 119436 0.67 0.992863
Target:  5'- cAGGACCCUgugCUUgGGCAgCGUGAugGa -3'
miRNA:   3'- -UUCUGGGG---GAAgUUGUgGCAUUugCa -5'
16218 3' -51.2 NC_004065.1 + 82403 0.67 0.992863
Target:  5'- gGGGACCUuaUCggCGAUAUCGUAGACGg -3'
miRNA:   3'- -UUCUGGG--GGaaGUUGUGGCAUUUGCa -5'
16218 3' -51.2 NC_004065.1 + 221321 0.67 0.993534
Target:  5'- cAGGCCCCCcuaacgcgcuacuggCGAcCACCGUcGACGUu -3'
miRNA:   3'- uUCUGGGGGaa-------------GUU-GUGGCAuUUGCA- -5'
16218 3' -51.2 NC_004065.1 + 173849 0.67 0.993805
Target:  5'- -uGGCCCCCcggcugggUCuuCACCGUGAuCGa -3'
miRNA:   3'- uuCUGGGGGa-------AGuuGUGGCAUUuGCa -5'
16218 3' -51.2 NC_004065.1 + 80494 0.67 0.993805
Target:  5'- aAGGGCUUCCUugUCGAUGCCGUAGAa-- -3'
miRNA:   3'- -UUCUGGGGGA--AGUUGUGGCAUUUgca -5'
16218 3' -51.2 NC_004065.1 + 87318 0.67 0.993805
Target:  5'- cAGGACCCCC---GACGCCGgguccagGAGCa- -3'
miRNA:   3'- -UUCUGGGGGaagUUGUGGCa------UUUGca -5'
16218 3' -51.2 NC_004065.1 + 109502 0.67 0.993805
Target:  5'- gGAGACCC---UCGACAUCGUcGAGCGg -3'
miRNA:   3'- -UUCUGGGggaAGUUGUGGCA-UUUGCa -5'
16218 3' -51.2 NC_004065.1 + 148591 0.67 0.993805
Target:  5'- aGAGAUCCCCguccagUUCucCGCCGggGACGa -3'
miRNA:   3'- -UUCUGGGGG------AAGuuGUGGCauUUGCa -5'
16218 3' -51.2 NC_004065.1 + 81691 0.67 0.993805
Target:  5'- -uGACCaaggaCggCGACACCGUGGGCGa -3'
miRNA:   3'- uuCUGGgg---GaaGUUGUGGCAUUUGCa -5'
16218 3' -51.2 NC_004065.1 + 101405 0.67 0.994644
Target:  5'- -uGACCUCCgcCAACgACCGUGggGGCGg -3'
miRNA:   3'- uuCUGGGGGaaGUUG-UGGCAU--UUGCa -5'
16218 3' -51.2 NC_004065.1 + 107818 0.67 0.994644
Target:  5'- cGGGCCaccagCCUguaGGCGCCGUAGAUGg -3'
miRNA:   3'- uUCUGGg----GGAag-UUGUGGCAUUUGCa -5'
16218 3' -51.2 NC_004065.1 + 35395 0.67 0.994644
Target:  5'- uGGACCgUCaUCGGCGCCGUGGGagaGUa -3'
miRNA:   3'- uUCUGGgGGaAGUUGUGGCAUUUg--CA- -5'
16218 3' -51.2 NC_004065.1 + 2968 0.66 0.995175
Target:  5'- cAAGACCUCCUgggaaagcgaccucUCGGCGCCG---ACGa -3'
miRNA:   3'- -UUCUGGGGGA--------------AGUUGUGGCauuUGCa -5'
16218 3' -51.2 NC_004065.1 + 46262 0.66 0.995389
Target:  5'- gAAGAUaaCCCgUUCGACcuggucgagGCCGUGGGCGa -3'
miRNA:   3'- -UUCUG--GGGgAAGUUG---------UGGCAUUUGCa -5'
16218 3' -51.2 NC_004065.1 + 76647 0.66 0.995389
Target:  5'- uAGACCCUaggCAGCAUCGgcucgAAACGg -3'
miRNA:   3'- uUCUGGGGgaaGUUGUGGCa----UUUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.