Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16218 | 3' | -51.2 | NC_004065.1 | + | 52805 | 0.66 | 0.99796 |
Target: 5'- aGAGGCUCUCUUCugugacaagaacGGCACCGUcAGCa- -3' miRNA: 3'- -UUCUGGGGGAAG------------UUGUGGCAuUUGca -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 94255 | 0.66 | 0.99796 |
Target: 5'- --aGCCCCCUcCggUGCCGUucACGa -3' miRNA: 3'- uucUGGGGGAaGuuGUGGCAuuUGCa -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 138365 | 0.66 | 0.997924 |
Target: 5'- -cGACCCCCgucgUCAucGCGCCGcuguugaUAGACc- -3' miRNA: 3'- uuCUGGGGGa---AGU--UGUGGC-------AUUUGca -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 57062 | 0.66 | 0.99785 |
Target: 5'- cAAGGCCCCg-UCAACGUCGUugucauagaccaacGAACGUg -3' miRNA: 3'- -UUCUGGGGgaAGUUGUGGCA--------------UUUGCA- -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 159550 | 0.66 | 0.997576 |
Target: 5'- cGGugUCCCUgaaCGcCGCCGUGAAgGUg -3' miRNA: 3'- uUCugGGGGAa--GUuGUGGCAUUUgCA- -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 209281 | 0.66 | 0.997576 |
Target: 5'- --cACCCUCUUCAcccuCGCCGUGAuCGc -3' miRNA: 3'- uucUGGGGGAAGUu---GUGGCAUUuGCa -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 186037 | 0.66 | 0.997576 |
Target: 5'- aGGGACCCCg--CG--ACCGUGGACGa -3' miRNA: 3'- -UUCUGGGGgaaGUugUGGCAUUUGCa -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 61569 | 0.66 | 0.997576 |
Target: 5'- gGGGACggcguuCCUCUUgGACGCCGUcucGACGUa -3' miRNA: 3'- -UUCUG------GGGGAAgUUGUGGCAu--UUGCA- -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 194808 | 0.66 | 0.997576 |
Target: 5'- -cGAgCCCCUg-AACGCCGUG-GCGg -3' miRNA: 3'- uuCUgGGGGAagUUGUGGCAUuUGCa -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 207169 | 0.66 | 0.997134 |
Target: 5'- --cGCCaCCUUCGACACCGUcccAGACu- -3' miRNA: 3'- uucUGGgGGAAGUUGUGGCA---UUUGca -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 113995 | 0.66 | 0.997134 |
Target: 5'- -cGGCCUCCUcgcCAGCACgGUcGACGa -3' miRNA: 3'- uuCUGGGGGAa--GUUGUGgCAuUUGCa -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 121346 | 0.66 | 0.997134 |
Target: 5'- aAAGACCUUCcaacaGACACCGUcgGCGa -3' miRNA: 3'- -UUCUGGGGGaag--UUGUGGCAuuUGCa -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 37499 | 0.66 | 0.997134 |
Target: 5'- cGGACCCCUggCGGCucuCCGccAAGCGg -3' miRNA: 3'- uUCUGGGGGaaGUUGu--GGCa-UUUGCa -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 10121 | 0.66 | 0.996626 |
Target: 5'- cAGGCCCaUCUUCAACACUuaAAAUGa -3' miRNA: 3'- uUCUGGG-GGAAGUUGUGGcaUUUGCa -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 45895 | 0.66 | 0.996626 |
Target: 5'- gGGGGCUCCgUUCAcCGCuCGUuAACGUa -3' miRNA: 3'- -UUCUGGGGgAAGUuGUG-GCAuUUGCA- -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 37385 | 0.66 | 0.996626 |
Target: 5'- cGAGAUCCaaauaacguguaCCUUCGACGCgGUGuccGACGg -3' miRNA: 3'- -UUCUGGG------------GGAAGUUGUGgCAU---UUGCa -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 138205 | 0.66 | 0.996572 |
Target: 5'- -cGACCCCCgcuccuguauaauUUCGAUGCCGggGAgGUc -3' miRNA: 3'- uuCUGGGGG-------------AAGUUGUGGCauUUgCA- -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 52535 | 0.66 | 0.995389 |
Target: 5'- -uGACCCCCggCGGCcccGCCGU--GCGc -3' miRNA: 3'- uuCUGGGGGaaGUUG---UGGCAuuUGCa -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 16295 | 0.66 | 0.995389 |
Target: 5'- cAGACCUCCUUC--CACCGUugguauAUGUg -3' miRNA: 3'- uUCUGGGGGAAGuuGUGGCAuu----UGCA- -5' |
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16218 | 3' | -51.2 | NC_004065.1 | + | 46262 | 0.66 | 0.995389 |
Target: 5'- gAAGAUaaCCCgUUCGACcuggucgagGCCGUGGGCGa -3' miRNA: 3'- -UUCUG--GGGgAAGUUG---------UGGCAUUUGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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