miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16218 3' -51.2 NC_004065.1 + 2968 0.66 0.995175
Target:  5'- cAAGACCUCCUgggaaagcgaccucUCGGCGCCG---ACGa -3'
miRNA:   3'- -UUCUGGGGGA--------------AGUUGUGGCauuUGCa -5'
16218 3' -51.2 NC_004065.1 + 5120 0.79 0.607262
Target:  5'- cGGGCCUCCgcucaccgaCGACACCGUGGACGUg -3'
miRNA:   3'- uUCUGGGGGaa-------GUUGUGGCAUUUGCA- -5'
16218 3' -51.2 NC_004065.1 + 9011 0.68 0.986321
Target:  5'- cGGGuACCCCCUUgCAACugCGg--GCGg -3'
miRNA:   3'- -UUC-UGGGGGAA-GUUGugGCauuUGCa -5'
16218 3' -51.2 NC_004065.1 + 10121 0.66 0.996626
Target:  5'- cAGGCCCaUCUUCAACACUuaAAAUGa -3'
miRNA:   3'- uUCUGGG-GGAAGUUGUGGcaUUUGCa -5'
16218 3' -51.2 NC_004065.1 + 10683 0.68 0.982687
Target:  5'- uAAGAUCCCgUaCAGCACCG-AGAUGg -3'
miRNA:   3'- -UUCUGGGGgAaGUUGUGGCaUUUGCa -5'
16218 3' -51.2 NC_004065.1 + 16295 0.66 0.995389
Target:  5'- cAGACCUCCUUC--CACCGUugguauAUGUg -3'
miRNA:   3'- uUCUGGGGGAAGuuGUGGCAuu----UGCA- -5'
16218 3' -51.2 NC_004065.1 + 23454 0.68 0.986321
Target:  5'- cGAGGCCCCCaUCGuGCACacgcaGUAAACu- -3'
miRNA:   3'- -UUCUGGGGGaAGU-UGUGg----CAUUUGca -5'
16218 3' -51.2 NC_004065.1 + 31917 0.69 0.978369
Target:  5'- cAGACCUCgUUCuggGACGCCcGUAGGCGa -3'
miRNA:   3'- uUCUGGGGgAAG---UUGUGG-CAUUUGCa -5'
16218 3' -51.2 NC_004065.1 + 35395 0.67 0.994644
Target:  5'- uGGACCgUCaUCGGCGCCGUGGGagaGUa -3'
miRNA:   3'- uUCUGGgGGaAGUUGUGGCAUUUg--CA- -5'
16218 3' -51.2 NC_004065.1 + 35820 0.67 0.991811
Target:  5'- aGGGAUCCCCgUCucCAUCGUGAcgGCGg -3'
miRNA:   3'- -UUCUGGGGGaAGuuGUGGCAUU--UGCa -5'
16218 3' -51.2 NC_004065.1 + 37385 0.66 0.996626
Target:  5'- cGAGAUCCaaauaacguguaCCUUCGACGCgGUGuccGACGg -3'
miRNA:   3'- -UUCUGGG------------GGAAGUUGUGgCAU---UUGCa -5'
16218 3' -51.2 NC_004065.1 + 37499 0.66 0.997134
Target:  5'- cGGACCCCUggCGGCucuCCGccAAGCGg -3'
miRNA:   3'- uUCUGGGGGaaGUUGu--GGCa-UUUGCa -5'
16218 3' -51.2 NC_004065.1 + 39357 0.69 0.97047
Target:  5'- aGAGAUCCUCUUCGAgACCucGUGGACu- -3'
miRNA:   3'- -UUCUGGGGGAAGUUgUGG--CAUUUGca -5'
16218 3' -51.2 NC_004065.1 + 45895 0.66 0.996626
Target:  5'- gGGGGCUCCgUUCAcCGCuCGUuAACGUa -3'
miRNA:   3'- -UUCUGGGGgAAGUuGUG-GCAuUUGCA- -5'
16218 3' -51.2 NC_004065.1 + 46262 0.66 0.995389
Target:  5'- gAAGAUaaCCCgUUCGACcuggucgagGCCGUGGGCGa -3'
miRNA:   3'- -UUCUG--GGGgAAGUUG---------UGGCAUUUGCa -5'
16218 3' -51.2 NC_004065.1 + 50454 0.69 0.975933
Target:  5'- -uGGCgCCCCUUCAGCGCCcagcACGa -3'
miRNA:   3'- uuCUG-GGGGAAGUUGUGGcauuUGCa -5'
16218 3' -51.2 NC_004065.1 + 52535 0.66 0.995389
Target:  5'- -uGACCCCCggCGGCcccGCCGU--GCGc -3'
miRNA:   3'- uuCUGGGGGaaGUUG---UGGCAuuUGCa -5'
16218 3' -51.2 NC_004065.1 + 52805 0.66 0.99796
Target:  5'- aGAGGCUCUCUUCugugacaagaacGGCACCGUcAGCa- -3'
miRNA:   3'- -UUCUGGGGGAAG------------UUGUGGCAuUUGca -5'
16218 3' -51.2 NC_004065.1 + 55559 0.7 0.964171
Target:  5'- -cGugCCCCgggUCGACGuaGUAGACGg -3'
miRNA:   3'- uuCugGGGGa--AGUUGUggCAUUUGCa -5'
16218 3' -51.2 NC_004065.1 + 57062 0.66 0.99785
Target:  5'- cAAGGCCCCg-UCAACGUCGUugucauagaccaacGAACGUg -3'
miRNA:   3'- -UUCUGGGGgaAGUUGUGGCA--------------UUUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.