miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16218 3' -51.2 NC_004065.1 + 61569 0.66 0.997576
Target:  5'- gGGGACggcguuCCUCUUgGACGCCGUcucGACGUa -3'
miRNA:   3'- -UUCUG------GGGGAAgUUGUGGCAu--UUGCA- -5'
16218 3' -51.2 NC_004065.1 + 63717 0.68 0.982687
Target:  5'- -uGAUCgCCUgguggUCGGCGCCGUAGACa- -3'
miRNA:   3'- uuCUGGgGGA-----AGUUGUGGCAUUUGca -5'
16218 3' -51.2 NC_004065.1 + 70090 0.7 0.959238
Target:  5'- cGGACCCCgaggcgacgagCAGCACCGgcAGCGg -3'
miRNA:   3'- uUCUGGGGgaa--------GUUGUGGCauUUGCa -5'
16218 3' -51.2 NC_004065.1 + 71663 0.67 0.991811
Target:  5'- aAGGGCCUCCUcagcagCAGCAgCGgcGGCGg -3'
miRNA:   3'- -UUCUGGGGGAa-----GUUGUgGCauUUGCa -5'
16218 3' -51.2 NC_004065.1 + 76647 0.66 0.995389
Target:  5'- uAGACCCUaggCAGCAUCGgcucgAAACGg -3'
miRNA:   3'- uUCUGGGGgaaGUUGUGGCa----UUUGCa -5'
16218 3' -51.2 NC_004065.1 + 80494 0.67 0.993805
Target:  5'- aAGGGCUUCCUugUCGAUGCCGUAGAa-- -3'
miRNA:   3'- -UUCUGGGGGA--AGUUGUGGCAUUUgca -5'
16218 3' -51.2 NC_004065.1 + 81691 0.67 0.993805
Target:  5'- -uGACCaaggaCggCGACACCGUGGGCGa -3'
miRNA:   3'- uuCUGGgg---GaaGUUGUGGCAUUUGCa -5'
16218 3' -51.2 NC_004065.1 + 82403 0.67 0.992863
Target:  5'- gGGGACCUuaUCggCGAUAUCGUAGACGg -3'
miRNA:   3'- -UUCUGGG--GGaaGUUGUGGCAUUUGCa -5'
16218 3' -51.2 NC_004065.1 + 87318 0.67 0.993805
Target:  5'- cAGGACCCCC---GACGCCGgguccagGAGCa- -3'
miRNA:   3'- -UUCUGGGGGaagUUGUGGCa------UUUGca -5'
16218 3' -51.2 NC_004065.1 + 90679 0.68 0.987903
Target:  5'- -uGGCCCCCUUgcCGGCGCUGggcACGa -3'
miRNA:   3'- uuCUGGGGGAA--GUUGUGGCauuUGCa -5'
16218 3' -51.2 NC_004065.1 + 94255 0.66 0.99796
Target:  5'- --aGCCCCCUcCggUGCCGUucACGa -3'
miRNA:   3'- uucUGGGGGAaGuuGUGGCAuuUGCa -5'
16218 3' -51.2 NC_004065.1 + 97584 0.7 0.964171
Target:  5'- -cGGCgCCCUUCGACAUgcUGAACGUg -3'
miRNA:   3'- uuCUGgGGGAAGUUGUGgcAUUUGCA- -5'
16218 3' -51.2 NC_004065.1 + 100708 0.71 0.939814
Target:  5'- -uGACCCCCUgguccUCGAUcCCGUGuACGUc -3'
miRNA:   3'- uuCUGGGGGA-----AGUUGuGGCAUuUGCA- -5'
16218 3' -51.2 NC_004065.1 + 101405 0.67 0.994644
Target:  5'- -uGACCUCCgcCAACgACCGUGggGGCGg -3'
miRNA:   3'- uuCUGGGGGaaGUUG-UGGCAU--UUGCa -5'
16218 3' -51.2 NC_004065.1 + 106689 0.68 0.984585
Target:  5'- cAAGACCCUgUUCAAgACgGUGGAgGa -3'
miRNA:   3'- -UUCUGGGGgAAGUUgUGgCAUUUgCa -5'
16218 3' -51.2 NC_004065.1 + 107818 0.67 0.994644
Target:  5'- cGGGCCaccagCCUguaGGCGCCGUAGAUGg -3'
miRNA:   3'- uUCUGGg----GGAag-UUGUGGCAUUUGCa -5'
16218 3' -51.2 NC_004065.1 + 109502 0.67 0.993805
Target:  5'- gGAGACCC---UCGACAUCGUcGAGCGg -3'
miRNA:   3'- -UUCUGGGggaAGUUGUGGCA-UUUGCa -5'
16218 3' -51.2 NC_004065.1 + 113995 0.66 0.997134
Target:  5'- -cGGCCUCCUcgcCAGCACgGUcGACGa -3'
miRNA:   3'- uuCUGGGGGAa--GUUGUGgCAuUUGCa -5'
16218 3' -51.2 NC_004065.1 + 119436 0.67 0.992863
Target:  5'- cAGGACCCUgugCUUgGGCAgCGUGAugGa -3'
miRNA:   3'- -UUCUGGGG---GAAgUUGUgGCAUUugCa -5'
16218 3' -51.2 NC_004065.1 + 120508 0.71 0.929775
Target:  5'- -cGACCCCCUcUUGGCGCCGcucGACGa -3'
miRNA:   3'- uuCUGGGGGA-AGUUGUGGCau-UUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.